Hb_002304_160

Information

Type -
Description -
Location Contig2304: 128381-131354
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05240g
description POPTRDRAFT_758812; hypothetical protein
nr
ID XP_012091730.1
description PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
swissprot
ID Q8GYB1
description Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2
trembl
ID A0A067JBB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21528 PE=4 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24223: 123929-127500 , PASA_asmbl_24226: 128550-131302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_160 0.0 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
2 Hb_001545_160 0.083870868 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
3 Hb_000571_020 0.0867842629 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
4 Hb_001776_160 0.0879095589 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
5 Hb_000340_570 0.0892761574 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
6 Hb_000327_060 0.0906499089 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
7 Hb_027654_050 0.0911350417 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
8 Hb_002000_140 0.0914038539 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
9 Hb_003880_030 0.0927880483 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
10 Hb_002016_080 0.0986018739 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
11 Hb_000189_240 0.0986818442 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
12 Hb_003349_090 0.0989597917 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
13 Hb_004889_010 0.0998993635 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
14 Hb_006831_120 0.1004703651 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
15 Hb_000302_140 0.1011000249 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
16 Hb_002676_090 0.1016025109 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
17 Hb_004899_370 0.1017494869 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
18 Hb_091433_020 0.101914545 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
19 Hb_000175_030 0.1022121878 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
20 Hb_000525_020 0.10242404 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002304_160 Hb_002304_160 Hb_001545_160 Hb_001545_160 Hb_002304_160--Hb_001545_160 Hb_000571_020 Hb_000571_020 Hb_002304_160--Hb_000571_020 Hb_001776_160 Hb_001776_160 Hb_002304_160--Hb_001776_160 Hb_000340_570 Hb_000340_570 Hb_002304_160--Hb_000340_570 Hb_000327_060 Hb_000327_060 Hb_002304_160--Hb_000327_060 Hb_027654_050 Hb_027654_050 Hb_002304_160--Hb_027654_050 Hb_001545_160--Hb_000340_570 Hb_001545_160--Hb_000327_060 Hb_003502_060 Hb_003502_060 Hb_001545_160--Hb_003502_060 Hb_158445_010 Hb_158445_010 Hb_001545_160--Hb_158445_010 Hb_012423_030 Hb_012423_030 Hb_001545_160--Hb_012423_030 Hb_000302_140 Hb_000302_140 Hb_000571_020--Hb_000302_140 Hb_001329_150 Hb_001329_150 Hb_000571_020--Hb_001329_150 Hb_000538_120 Hb_000538_120 Hb_000571_020--Hb_000538_120 Hb_000254_050 Hb_000254_050 Hb_000571_020--Hb_000254_050 Hb_000189_240 Hb_000189_240 Hb_000571_020--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000571_020--Hb_000731_190 Hb_006831_120 Hb_006831_120 Hb_001776_160--Hb_006831_120 Hb_001776_160--Hb_027654_050 Hb_001085_120 Hb_001085_120 Hb_001776_160--Hb_001085_120 Hb_002110_200 Hb_002110_200 Hb_001776_160--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_000340_570--Hb_006831_120 Hb_010175_040 Hb_010175_040 Hb_000340_570--Hb_010175_040 Hb_004899_370 Hb_004899_370 Hb_000340_570--Hb_004899_370 Hb_000261_140 Hb_000261_140 Hb_000340_570--Hb_000261_140 Hb_000205_090 Hb_000205_090 Hb_000340_570--Hb_000205_090 Hb_000327_060--Hb_158445_010 Hb_004143_150 Hb_004143_150 Hb_000327_060--Hb_004143_150 Hb_005162_060 Hb_005162_060 Hb_000327_060--Hb_005162_060 Hb_002676_090 Hb_002676_090 Hb_000327_060--Hb_002676_090 Hb_000327_060--Hb_012423_030 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_027654_050--Hb_001512_080 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_027654_050--Hb_000254_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.88362 6.68554 11.1292 10.6628 2.59009 7.65364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2644 24.2382 16.8313 10.0484 8.52226

CAGE analysis