Hb_048898_010

Information

Type -
Description -
Location Contig48898: 49-1634
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03420g
description POPTRDRAFT_835082; STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein
nr
ID XP_011011808.1
description PREDICTED: uncharacterized protein LOC105116251 isoform X2 [Populus euphratica]
swissprot
ID Q8RXA7
description DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana GN=SCD1 PE=1 SV=1
trembl
ID B9IE09
description STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein OS=Populus trichocarpa GN=POPTR_0015s03420g PE=4 SV=1
Gene Ontology
ID GO:0080008
description stomatal cytokinesis-defective 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45163: 54-1224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048898_010 0.0 - - PREDICTED: uncharacterized protein LOC105116251 isoform X2 [Populus euphratica]
2 Hb_001449_010 0.1293288719 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008013_050 0.1348477743 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
4 Hb_181729_010 0.1365421763 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
5 Hb_000525_020 0.1380615691 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002304_160 0.1413776644 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
7 Hb_000684_270 0.1414796641 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
8 Hb_010106_010 0.1421847944 - - PREDICTED: cucumisin-like [Populus euphratica]
9 Hb_005245_080 0.1462922343 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
10 Hb_131181_010 0.1464301704 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
11 Hb_000193_110 0.1508258388 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
12 Hb_002811_290 0.150838903 - - aldo/keto reductase, putative [Ricinus communis]
13 Hb_001476_080 0.1522533944 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
14 Hb_006831_130 0.1527454121 - - catalytic, putative [Ricinus communis]
15 Hb_000331_430 0.154140467 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
16 Hb_004724_270 0.1543170846 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
17 Hb_021068_040 0.1558178674 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
18 Hb_001234_070 0.1562218759 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
19 Hb_003151_040 0.1568906299 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
20 Hb_000982_090 0.1570494009 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_048898_010 Hb_048898_010 Hb_001449_010 Hb_001449_010 Hb_048898_010--Hb_001449_010 Hb_008013_050 Hb_008013_050 Hb_048898_010--Hb_008013_050 Hb_181729_010 Hb_181729_010 Hb_048898_010--Hb_181729_010 Hb_000525_020 Hb_000525_020 Hb_048898_010--Hb_000525_020 Hb_002304_160 Hb_002304_160 Hb_048898_010--Hb_002304_160 Hb_000684_270 Hb_000684_270 Hb_048898_010--Hb_000684_270 Hb_000331_430 Hb_000331_430 Hb_001449_010--Hb_000331_430 Hb_002811_290 Hb_002811_290 Hb_001449_010--Hb_002811_290 Hb_001234_070 Hb_001234_070 Hb_001449_010--Hb_001234_070 Hb_003362_030 Hb_003362_030 Hb_001449_010--Hb_003362_030 Hb_171900_060 Hb_171900_060 Hb_001449_010--Hb_171900_060 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030 Hb_010368_010 Hb_010368_010 Hb_181729_010--Hb_010368_010 Hb_002234_180 Hb_002234_180 Hb_181729_010--Hb_002234_180 Hb_181729_010--Hb_008013_050 Hb_002016_170 Hb_002016_170 Hb_181729_010--Hb_002016_170 Hb_019280_050 Hb_019280_050 Hb_181729_010--Hb_019280_050 Hb_171376_010 Hb_171376_010 Hb_181729_010--Hb_171376_010 Hb_000331_470 Hb_000331_470 Hb_000525_020--Hb_000331_470 Hb_004871_020 Hb_004871_020 Hb_000525_020--Hb_004871_020 Hb_091433_020 Hb_091433_020 Hb_000525_020--Hb_091433_020 Hb_001863_430 Hb_001863_430 Hb_000525_020--Hb_001863_430 Hb_000525_020--Hb_000684_270 Hb_003787_010 Hb_003787_010 Hb_000525_020--Hb_003787_010 Hb_001545_160 Hb_001545_160 Hb_002304_160--Hb_001545_160 Hb_000571_020 Hb_000571_020 Hb_002304_160--Hb_000571_020 Hb_001776_160 Hb_001776_160 Hb_002304_160--Hb_001776_160 Hb_000340_570 Hb_000340_570 Hb_002304_160--Hb_000340_570 Hb_000327_060 Hb_000327_060 Hb_002304_160--Hb_000327_060 Hb_027654_050 Hb_027654_050 Hb_002304_160--Hb_027654_050 Hb_002234_070 Hb_002234_070 Hb_000684_270--Hb_002234_070 Hb_008771_030 Hb_008771_030 Hb_000684_270--Hb_008771_030 Hb_077354_010 Hb_077354_010 Hb_000684_270--Hb_077354_010 Hb_000684_270--Hb_004871_020 Hb_029904_030 Hb_029904_030 Hb_000684_270--Hb_029904_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76098 2.87121 5.51341 3.55586 0.312939 3.44834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.4081 7.17157 3.51943 2.63634 2.59478

CAGE analysis