Hb_000959_310

Information

Type -
Description -
Location Contig959: 277040-281678
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31400g
description POPTRDRAFT_815667; transducin family protein
nr
ID XP_012075294.1
description PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
swissprot
ID Q5XGI5
description WD repeat domain-containing protein 83 OS=Xenopus tropicalis GN=wdr83 PE=2 SV=1
trembl
ID A0A067KTZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09463 PE=4 SV=1
Gene Ontology
ID GO:0080008
description wd repeat domain-containing protein 83

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63673: 281193-281438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_310 0.0 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
2 Hb_001799_110 0.1871294764 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
3 Hb_012120_030 0.1882926905 - - -
4 Hb_114336_030 0.2090150351 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
5 Hb_004931_080 0.209684922 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
6 Hb_188209_010 0.2117545932 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
7 Hb_003750_070 0.2134491495 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
8 Hb_000302_130 0.2158585836 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
9 Hb_000326_070 0.2182594275 - - phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
10 Hb_010712_080 0.2242313532 - - hypothetical protein AALP_AA5G019400 [Arabis alpina]
11 Hb_000046_490 0.2298928926 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
12 Hb_000264_290 0.2320423818 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
13 Hb_003544_020 0.2340368234 - - PREDICTED: elongin-A [Jatropha curcas]
14 Hb_001449_010 0.239783081 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000926_230 0.2410852958 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000442_090 0.2412305276 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
17 Hb_001114_160 0.2447467946 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
18 Hb_100105_010 0.2449231287 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
19 Hb_007123_060 0.2452292787 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
20 Hb_004374_180 0.246747693 - - GMP synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000959_310 Hb_000959_310 Hb_001799_110 Hb_001799_110 Hb_000959_310--Hb_001799_110 Hb_012120_030 Hb_012120_030 Hb_000959_310--Hb_012120_030 Hb_114336_030 Hb_114336_030 Hb_000959_310--Hb_114336_030 Hb_004931_080 Hb_004931_080 Hb_000959_310--Hb_004931_080 Hb_188209_010 Hb_188209_010 Hb_000959_310--Hb_188209_010 Hb_003750_070 Hb_003750_070 Hb_000959_310--Hb_003750_070 Hb_003362_080 Hb_003362_080 Hb_001799_110--Hb_003362_080 Hb_075265_010 Hb_075265_010 Hb_001799_110--Hb_075265_010 Hb_009976_010 Hb_009976_010 Hb_001799_110--Hb_009976_010 Hb_001449_010 Hb_001449_010 Hb_001799_110--Hb_001449_010 Hb_158144_010 Hb_158144_010 Hb_001799_110--Hb_158144_010 Hb_000186_190 Hb_000186_190 Hb_012120_030--Hb_000186_190 Hb_007123_060 Hb_007123_060 Hb_012120_030--Hb_007123_060 Hb_000264_290 Hb_000264_290 Hb_012120_030--Hb_000264_290 Hb_000106_130 Hb_000106_130 Hb_012120_030--Hb_000106_130 Hb_000302_130 Hb_000302_130 Hb_012120_030--Hb_000302_130 Hb_064264_010 Hb_064264_010 Hb_012120_030--Hb_064264_010 Hb_001097_100 Hb_001097_100 Hb_114336_030--Hb_001097_100 Hb_001114_160 Hb_001114_160 Hb_114336_030--Hb_001114_160 Hb_182424_030 Hb_182424_030 Hb_114336_030--Hb_182424_030 Hb_000170_200 Hb_000170_200 Hb_114336_030--Hb_000170_200 Hb_001221_320 Hb_001221_320 Hb_114336_030--Hb_001221_320 Hb_003848_040 Hb_003848_040 Hb_114336_030--Hb_003848_040 Hb_002301_360 Hb_002301_360 Hb_004931_080--Hb_002301_360 Hb_001140_070 Hb_001140_070 Hb_004931_080--Hb_001140_070 Hb_009780_080 Hb_009780_080 Hb_004931_080--Hb_009780_080 Hb_006970_080 Hb_006970_080 Hb_004931_080--Hb_006970_080 Hb_000510_330 Hb_000510_330 Hb_004931_080--Hb_000510_330 Hb_000788_130 Hb_000788_130 Hb_188209_010--Hb_000788_130 Hb_000789_070 Hb_000789_070 Hb_188209_010--Hb_000789_070 Hb_000326_070 Hb_000326_070 Hb_188209_010--Hb_000326_070 Hb_003371_180 Hb_003371_180 Hb_188209_010--Hb_003371_180 Hb_000175_090 Hb_000175_090 Hb_188209_010--Hb_000175_090 Hb_013405_060 Hb_013405_060 Hb_188209_010--Hb_013405_060 Hb_032208_020 Hb_032208_020 Hb_003750_070--Hb_032208_020 Hb_004545_020 Hb_004545_020 Hb_003750_070--Hb_004545_020 Hb_004228_080 Hb_004228_080 Hb_003750_070--Hb_004228_080 Hb_003050_110 Hb_003050_110 Hb_003750_070--Hb_003050_110 Hb_000092_130 Hb_000092_130 Hb_003750_070--Hb_000092_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.466012 0.201484 0.754016 0.417207 0.156318 0.373154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.890738 0.516233 0 0.162877 0

CAGE analysis