Hb_003750_070

Information

Type -
Description -
Location Contig3750: 40255-41127
Sequence    

Annotation

kegg
ID rcu:RCOM_0371590
description calcium ion binding protein, putative
nr
ID XP_012077824.1
description PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
swissprot
ID Q2V4B2
description PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1
trembl
ID A0A067KLQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13450 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbq-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38285: 41386-41727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003750_070 0.0 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
2 Hb_032208_020 0.2060578309 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
3 Hb_004545_020 0.2081456259 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
4 Hb_004228_080 0.2100713375 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
5 Hb_000959_310 0.2134491495 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
6 Hb_003050_110 0.2155029035 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
7 Hb_000092_130 0.2247791105 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
8 Hb_000329_270 0.2258973355 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
9 Hb_001114_160 0.22620586 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
10 Hb_032717_020 0.2295695271 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
11 Hb_029510_020 0.2295751563 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
12 Hb_001454_070 0.2308983638 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
13 Hb_000331_250 0.23100253 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
14 Hb_001124_070 0.2327438307 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
15 Hb_003544_020 0.232830621 - - PREDICTED: elongin-A [Jatropha curcas]
16 Hb_114336_030 0.2329859749 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
17 Hb_001300_210 0.2331229529 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
18 Hb_003849_130 0.2332388561 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
19 Hb_001377_030 0.2335725401 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
20 Hb_001449_010 0.2339799697 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003750_070 Hb_003750_070 Hb_032208_020 Hb_032208_020 Hb_003750_070--Hb_032208_020 Hb_004545_020 Hb_004545_020 Hb_003750_070--Hb_004545_020 Hb_004228_080 Hb_004228_080 Hb_003750_070--Hb_004228_080 Hb_000959_310 Hb_000959_310 Hb_003750_070--Hb_000959_310 Hb_003050_110 Hb_003050_110 Hb_003750_070--Hb_003050_110 Hb_000092_130 Hb_000092_130 Hb_003750_070--Hb_000092_130 Hb_001300_210 Hb_001300_210 Hb_032208_020--Hb_001300_210 Hb_002681_030 Hb_002681_030 Hb_032208_020--Hb_002681_030 Hb_032208_020--Hb_004228_080 Hb_032208_020--Hb_004545_020 Hb_001252_240 Hb_001252_240 Hb_032208_020--Hb_001252_240 Hb_004545_020--Hb_001300_210 Hb_002259_200 Hb_002259_200 Hb_004545_020--Hb_002259_200 Hb_004545_020--Hb_001252_240 Hb_001016_010 Hb_001016_010 Hb_004545_020--Hb_001016_010 Hb_008062_040 Hb_008062_040 Hb_004545_020--Hb_008062_040 Hb_007432_030 Hb_007432_030 Hb_004228_080--Hb_007432_030 Hb_020805_080 Hb_020805_080 Hb_004228_080--Hb_020805_080 Hb_002183_070 Hb_002183_070 Hb_004228_080--Hb_002183_070 Hb_004934_030 Hb_004934_030 Hb_004228_080--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_004228_080--Hb_002374_570 Hb_003607_150 Hb_003607_150 Hb_004228_080--Hb_003607_150 Hb_001799_110 Hb_001799_110 Hb_000959_310--Hb_001799_110 Hb_012120_030 Hb_012120_030 Hb_000959_310--Hb_012120_030 Hb_114336_030 Hb_114336_030 Hb_000959_310--Hb_114336_030 Hb_004931_080 Hb_004931_080 Hb_000959_310--Hb_004931_080 Hb_188209_010 Hb_188209_010 Hb_000959_310--Hb_188209_010 Hb_001377_030 Hb_001377_030 Hb_003050_110--Hb_001377_030 Hb_001269_640 Hb_001269_640 Hb_003050_110--Hb_001269_640 Hb_001476_070 Hb_001476_070 Hb_003050_110--Hb_001476_070 Hb_003050_110--Hb_004934_030 Hb_000331_250 Hb_000331_250 Hb_003050_110--Hb_000331_250 Hb_001114_160 Hb_001114_160 Hb_003050_110--Hb_001114_160 Hb_000046_490 Hb_000046_490 Hb_000092_130--Hb_000046_490 Hb_011316_100 Hb_011316_100 Hb_000092_130--Hb_011316_100 Hb_003544_020 Hb_003544_020 Hb_000092_130--Hb_003544_020 Hb_002301_290 Hb_002301_290 Hb_000092_130--Hb_002301_290 Hb_000092_130--Hb_002183_070 Hb_002081_070 Hb_002081_070 Hb_000092_130--Hb_002081_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61011 0.0553504 3.93301 1.19844 0.572274 1.03751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50325 2.0651 0.504054 0.529433 0

CAGE analysis