Hb_004545_020

Information

Type -
Description -
Location Contig4545: 19999-23627
Sequence    

Annotation

kegg
ID rcu:RCOM_1429410
description hypothetical protein
nr
ID XP_011023490.1
description PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
swissprot
ID Q791F6
description Transmembrane protein adipocyte-associated 1 OS=Rattus norvegicus GN=Tpra1 PE=2 SV=1
trembl
ID B9REW7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1429410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43373: 22064-22274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_020 0.0 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
2 Hb_001300_210 0.2051257642 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
3 Hb_002259_200 0.2079185459 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003750_070 0.2081456259 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
5 Hb_001252_240 0.217612919 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
6 Hb_001016_010 0.2280836642 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008062_040 0.237093912 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
8 Hb_032208_020 0.2378025181 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
9 Hb_000005_180 0.2385377824 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004228_080 0.2386796686 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
11 Hb_002067_010 0.2427123915 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001377_030 0.2430037429 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
13 Hb_000138_050 0.248060047 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
14 Hb_001085_050 0.2484867483 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
15 Hb_003050_110 0.2524430422 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
16 Hb_000261_330 0.2565579243 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
17 Hb_001507_080 0.2619333266 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
18 Hb_004324_390 0.266574418 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
19 Hb_001431_110 0.2708226684 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
20 Hb_147090_010 0.2713462431 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Malus domestica]

Gene co-expression network

sample Hb_004545_020 Hb_004545_020 Hb_001300_210 Hb_001300_210 Hb_004545_020--Hb_001300_210 Hb_002259_200 Hb_002259_200 Hb_004545_020--Hb_002259_200 Hb_003750_070 Hb_003750_070 Hb_004545_020--Hb_003750_070 Hb_001252_240 Hb_001252_240 Hb_004545_020--Hb_001252_240 Hb_001016_010 Hb_001016_010 Hb_004545_020--Hb_001016_010 Hb_008062_040 Hb_008062_040 Hb_004545_020--Hb_008062_040 Hb_002681_030 Hb_002681_030 Hb_001300_210--Hb_002681_030 Hb_032208_020 Hb_032208_020 Hb_001300_210--Hb_032208_020 Hb_003927_120 Hb_003927_120 Hb_001300_210--Hb_003927_120 Hb_001300_210--Hb_003750_070 Hb_004228_080 Hb_004228_080 Hb_001300_210--Hb_004228_080 Hb_021495_010 Hb_021495_010 Hb_002259_200--Hb_021495_010 Hb_025214_120 Hb_025214_120 Hb_002259_200--Hb_025214_120 Hb_010998_050 Hb_010998_050 Hb_002259_200--Hb_010998_050 Hb_010812_070 Hb_010812_070 Hb_002259_200--Hb_010812_070 Hb_002259_200--Hb_001252_240 Hb_003750_070--Hb_032208_020 Hb_003750_070--Hb_004228_080 Hb_000959_310 Hb_000959_310 Hb_003750_070--Hb_000959_310 Hb_003050_110 Hb_003050_110 Hb_003750_070--Hb_003050_110 Hb_000092_130 Hb_000092_130 Hb_003750_070--Hb_000092_130 Hb_023765_020 Hb_023765_020 Hb_001252_240--Hb_023765_020 Hb_000905_120 Hb_000905_120 Hb_001252_240--Hb_000905_120 Hb_007811_040 Hb_007811_040 Hb_001252_240--Hb_007811_040 Hb_010577_030 Hb_010577_030 Hb_001252_240--Hb_010577_030 Hb_000369_010 Hb_000369_010 Hb_001252_240--Hb_000369_010 Hb_010080_010 Hb_010080_010 Hb_001252_240--Hb_010080_010 Hb_004162_230 Hb_004162_230 Hb_001016_010--Hb_004162_230 Hb_000544_030 Hb_000544_030 Hb_001016_010--Hb_000544_030 Hb_002411_060 Hb_002411_060 Hb_001016_010--Hb_002411_060 Hb_001016_010--Hb_025214_120 Hb_001016_010--Hb_010998_050 Hb_030627_070 Hb_030627_070 Hb_001016_010--Hb_030627_070 Hb_001085_050 Hb_001085_050 Hb_008062_040--Hb_001085_050 Hb_000575_030 Hb_000575_030 Hb_008062_040--Hb_000575_030 Hb_000072_070 Hb_000072_070 Hb_008062_040--Hb_000072_070 Hb_000317_490 Hb_000317_490 Hb_008062_040--Hb_000317_490 Hb_011316_100 Hb_011316_100 Hb_008062_040--Hb_011316_100 Hb_000331_250 Hb_000331_250 Hb_008062_040--Hb_000331_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.449606 0 1.10561 0.175938 0.0983948 0.197622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.513589 0.155386 0.173631 0.0497765 0.0643948

CAGE analysis