Hb_003927_120

Information

Type -
Description -
Location Contig3927: 94432-100199
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04760g
description hypothetical protein
nr
ID XP_012064950.1
description PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A067L6T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05638 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39346: 97253-100009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_120 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
2 Hb_023765_020 0.184647079 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
3 Hb_000950_070 0.1886571361 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
4 Hb_001373_110 0.1938033169 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
5 Hb_001252_240 0.1987510844 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
6 Hb_001085_260 0.2003690783 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
7 Hb_140833_010 0.2031616957 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
8 Hb_028341_010 0.2063449254 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
9 Hb_003688_050 0.2077603587 - - PREDICTED: uncharacterized protein LOC105640616 isoform X2 [Jatropha curcas]
10 Hb_001454_070 0.2090403733 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
11 Hb_026549_020 0.2100352278 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001377_030 0.2134350616 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
13 Hb_010577_030 0.2145134446 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
14 Hb_000000_360 0.2145535569 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
15 Hb_011013_010 0.2157093792 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_153258_050 0.2158637559 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
17 Hb_161478_010 0.2189022928 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000318_210 0.2231154091 - - PREDICTED: 40S ribosomal protein S12-like isoform X1 [Jatropha curcas]
19 Hb_000086_700 0.225053458 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
20 Hb_001300_210 0.2258616638 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]

Gene co-expression network

sample Hb_003927_120 Hb_003927_120 Hb_023765_020 Hb_023765_020 Hb_003927_120--Hb_023765_020 Hb_000950_070 Hb_000950_070 Hb_003927_120--Hb_000950_070 Hb_001373_110 Hb_001373_110 Hb_003927_120--Hb_001373_110 Hb_001252_240 Hb_001252_240 Hb_003927_120--Hb_001252_240 Hb_001085_260 Hb_001085_260 Hb_003927_120--Hb_001085_260 Hb_140833_010 Hb_140833_010 Hb_003927_120--Hb_140833_010 Hb_001454_070 Hb_001454_070 Hb_023765_020--Hb_001454_070 Hb_023765_020--Hb_001252_240 Hb_000369_010 Hb_000369_010 Hb_023765_020--Hb_000369_010 Hb_000086_700 Hb_000086_700 Hb_023765_020--Hb_000086_700 Hb_000260_800 Hb_000260_800 Hb_023765_020--Hb_000260_800 Hb_001277_280 Hb_001277_280 Hb_023765_020--Hb_001277_280 Hb_002471_250 Hb_002471_250 Hb_000950_070--Hb_002471_250 Hb_001396_210 Hb_001396_210 Hb_000950_070--Hb_001396_210 Hb_000215_090 Hb_000215_090 Hb_000950_070--Hb_000215_090 Hb_027792_010 Hb_027792_010 Hb_000950_070--Hb_027792_010 Hb_001517_050 Hb_001517_050 Hb_000950_070--Hb_001517_050 Hb_158144_010 Hb_158144_010 Hb_000950_070--Hb_158144_010 Hb_001373_110--Hb_140833_010 Hb_011013_010 Hb_011013_010 Hb_001373_110--Hb_011013_010 Hb_000661_140 Hb_000661_140 Hb_001373_110--Hb_000661_140 Hb_000976_260 Hb_000976_260 Hb_001373_110--Hb_000976_260 Hb_000012_020 Hb_000012_020 Hb_001373_110--Hb_000012_020 Hb_002450_040 Hb_002450_040 Hb_001373_110--Hb_002450_040 Hb_000905_120 Hb_000905_120 Hb_001252_240--Hb_000905_120 Hb_007811_040 Hb_007811_040 Hb_001252_240--Hb_007811_040 Hb_010577_030 Hb_010577_030 Hb_001252_240--Hb_010577_030 Hb_001252_240--Hb_000369_010 Hb_010080_010 Hb_010080_010 Hb_001252_240--Hb_010080_010 Hb_002485_030 Hb_002485_030 Hb_001085_260--Hb_002485_030 Hb_002960_150 Hb_002960_150 Hb_001085_260--Hb_002960_150 Hb_003760_030 Hb_003760_030 Hb_001085_260--Hb_003760_030 Hb_002284_210 Hb_002284_210 Hb_001085_260--Hb_002284_210 Hb_000207_150 Hb_000207_150 Hb_001085_260--Hb_000207_150 Hb_003119_090 Hb_003119_090 Hb_001085_260--Hb_003119_090 Hb_000000_360 Hb_000000_360 Hb_140833_010--Hb_000000_360 Hb_140833_010--Hb_000661_140 Hb_005588_030 Hb_005588_030 Hb_140833_010--Hb_005588_030 Hb_000694_040 Hb_000694_040 Hb_140833_010--Hb_000694_040 Hb_140833_010--Hb_011013_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0378 1.1876 19.5776 6.67583 1.63339 12.1752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.84255 8.97512 5.29429 3.46631 0.876816

CAGE analysis