Hb_025214_120

Information

Type -
Description -
Location Contig25214: 168586-170849
Sequence    

Annotation

kegg
ID rcu:RCOM_1119080
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012080639.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
swissprot
ID Q9ZU91
description Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2
trembl
ID A0A067K3L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13749 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26397: 168586-170707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025214_120 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
2 Hb_000260_650 0.1660810713 - - PREDICTED: protein PFC0760c [Jatropha curcas]
3 Hb_001510_040 0.1919159628 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
4 Hb_005271_140 0.1968938947 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
5 Hb_002411_060 0.1974305383 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
6 Hb_004162_230 0.198513075 - - PREDICTED: histone H2B [Jatropha curcas]
7 Hb_000684_120 0.1994022283 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
8 Hb_006970_130 0.1999679941 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
9 Hb_000206_030 0.2011272445 - - PREDICTED: uncharacterized protein LOC105639682 [Jatropha curcas]
10 Hb_000345_410 0.2031394072 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
11 Hb_000321_080 0.2038003001 - - histone H4 [Zea mays]
12 Hb_021495_010 0.2048166005 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004968_040 0.2062046866 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
14 Hb_010998_050 0.2080558272 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
15 Hb_000288_090 0.2082839953 - - unnamed protein product [Vitis vinifera]
16 Hb_000960_090 0.2132051268 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001135_110 0.2134579285 - - -
18 Hb_000224_080 0.2138385341 - - hypothetical protein RCOM_0510880 [Ricinus communis]
19 Hb_001016_010 0.2162017469 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001195_640 0.2168441811 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]

Gene co-expression network

sample Hb_025214_120 Hb_025214_120 Hb_000260_650 Hb_000260_650 Hb_025214_120--Hb_000260_650 Hb_001510_040 Hb_001510_040 Hb_025214_120--Hb_001510_040 Hb_005271_140 Hb_005271_140 Hb_025214_120--Hb_005271_140 Hb_002411_060 Hb_002411_060 Hb_025214_120--Hb_002411_060 Hb_004162_230 Hb_004162_230 Hb_025214_120--Hb_004162_230 Hb_000684_120 Hb_000684_120 Hb_025214_120--Hb_000684_120 Hb_000960_090 Hb_000960_090 Hb_000260_650--Hb_000960_090 Hb_005901_030 Hb_005901_030 Hb_000260_650--Hb_005901_030 Hb_004155_020 Hb_004155_020 Hb_000260_650--Hb_004155_020 Hb_000288_090 Hb_000288_090 Hb_000260_650--Hb_000288_090 Hb_000668_060 Hb_000668_060 Hb_000260_650--Hb_000668_060 Hb_006970_130 Hb_006970_130 Hb_000260_650--Hb_006970_130 Hb_003580_010 Hb_003580_010 Hb_001510_040--Hb_003580_010 Hb_004968_040 Hb_004968_040 Hb_001510_040--Hb_004968_040 Hb_004079_090 Hb_004079_090 Hb_001510_040--Hb_004079_090 Hb_001862_050 Hb_001862_050 Hb_001510_040--Hb_001862_050 Hb_118283_010 Hb_118283_010 Hb_001510_040--Hb_118283_010 Hb_003109_010 Hb_003109_010 Hb_001510_040--Hb_003109_010 Hb_005271_140--Hb_006970_130 Hb_001232_090 Hb_001232_090 Hb_005271_140--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_005271_140--Hb_000684_120 Hb_000757_130 Hb_000757_130 Hb_005271_140--Hb_000757_130 Hb_000563_440 Hb_000563_440 Hb_005271_140--Hb_000563_440 Hb_002411_060--Hb_000684_120 Hb_002411_060--Hb_004162_230 Hb_004449_040 Hb_004449_040 Hb_002411_060--Hb_004449_040 Hb_000345_260 Hb_000345_260 Hb_002411_060--Hb_000345_260 Hb_002837_050 Hb_002837_050 Hb_002411_060--Hb_002837_050 Hb_004117_190 Hb_004117_190 Hb_002411_060--Hb_004117_190 Hb_157022_030 Hb_157022_030 Hb_004162_230--Hb_157022_030 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_000739_270 Hb_000739_270 Hb_004162_230--Hb_000739_270 Hb_010998_050 Hb_010998_050 Hb_004162_230--Hb_010998_050 Hb_030627_070 Hb_030627_070 Hb_000684_120--Hb_030627_070 Hb_000684_120--Hb_000563_440 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_000684_120--Hb_004449_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6066 5.01507 127.927 77.4429 4.21028 5.94891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3031 6.90629 3.30104 14.0291 10.1267

CAGE analysis