Hb_001510_040

Information

Type -
Description -
Location Contig1510: 83362-91040
Sequence    

Annotation

kegg
ID rcu:RCOM_0294310
description Bipolar kinesin KRP-130, putative
nr
ID XP_012074874.1
description PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
swissprot
ID P82266
description Probable 125 kDa kinesin-related protein OS=Arabidopsis thaliana GN=At2g36200 PE=2 SV=2
trembl
ID A0A067KUR2
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_09022 PE=3 SV=1
Gene Ontology
ID GO:0005871
description 125 kda kinesin-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12746: 84069-84471 , PASA_asmbl_12747: 85937-88876 , PASA_asmbl_12748: 89104-89321 , PASA_asmbl_12750: 89553-90952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001510_040 0.0 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
2 Hb_003580_010 0.158048591 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
3 Hb_004968_040 0.1597463136 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
4 Hb_004079_090 0.1641545654 - - hypothetical protein RCOM_1053120 [Ricinus communis]
5 Hb_001862_050 0.1675578599 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
6 Hb_118283_010 0.1686340281 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003109_010 0.1712126526 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
8 Hb_000077_110 0.1757485789 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
9 Hb_002284_260 0.1777232851 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
10 Hb_000002_430 0.1789148806 - - PREDICTED: FHA domain-containing protein At4g14490 [Populus euphratica]
11 Hb_004129_060 0.1794604271 - - triacylglycerol lipase, putative [Ricinus communis]
12 Hb_004586_040 0.1813590511 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
13 Hb_000020_040 0.182348614 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
14 Hb_002965_160 0.1829263636 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
15 Hb_004531_080 0.1829950978 - - hypothetical protein RCOM_1491960 [Ricinus communis]
16 Hb_006970_130 0.1850442717 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
17 Hb_000567_290 0.1851887751 - - hypothetical protein RCOM_0303940 [Ricinus communis]
18 Hb_013344_010 0.1866118645 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
19 Hb_001501_070 0.1881032168 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
20 Hb_000320_310 0.1885497174 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]

Gene co-expression network

sample Hb_001510_040 Hb_001510_040 Hb_003580_010 Hb_003580_010 Hb_001510_040--Hb_003580_010 Hb_004968_040 Hb_004968_040 Hb_001510_040--Hb_004968_040 Hb_004079_090 Hb_004079_090 Hb_001510_040--Hb_004079_090 Hb_001862_050 Hb_001862_050 Hb_001510_040--Hb_001862_050 Hb_118283_010 Hb_118283_010 Hb_001510_040--Hb_118283_010 Hb_003109_010 Hb_003109_010 Hb_001510_040--Hb_003109_010 Hb_003580_010--Hb_004968_040 Hb_006970_130 Hb_006970_130 Hb_003580_010--Hb_006970_130 Hb_000934_150 Hb_000934_150 Hb_003580_010--Hb_000934_150 Hb_001823_090 Hb_001823_090 Hb_003580_010--Hb_001823_090 Hb_005271_140 Hb_005271_140 Hb_003580_010--Hb_005271_140 Hb_000003_060 Hb_000003_060 Hb_004968_040--Hb_000003_060 Hb_000077_110 Hb_000077_110 Hb_004968_040--Hb_000077_110 Hb_093458_020 Hb_093458_020 Hb_004968_040--Hb_093458_020 Hb_002284_260 Hb_002284_260 Hb_004968_040--Hb_002284_260 Hb_004968_040--Hb_006970_130 Hb_010436_080 Hb_010436_080 Hb_004968_040--Hb_010436_080 Hb_000020_040 Hb_000020_040 Hb_004079_090--Hb_000020_040 Hb_000002_430 Hb_000002_430 Hb_004079_090--Hb_000002_430 Hb_001755_040 Hb_001755_040 Hb_004079_090--Hb_001755_040 Hb_000936_030 Hb_000936_030 Hb_004079_090--Hb_000936_030 Hb_002232_310 Hb_002232_310 Hb_004079_090--Hb_002232_310 Hb_003935_090 Hb_003935_090 Hb_004079_090--Hb_003935_090 Hb_002965_160 Hb_002965_160 Hb_001862_050--Hb_002965_160 Hb_003020_190 Hb_003020_190 Hb_001862_050--Hb_003020_190 Hb_004129_060 Hb_004129_060 Hb_001862_050--Hb_004129_060 Hb_006133_020 Hb_006133_020 Hb_001862_050--Hb_006133_020 Hb_000069_300 Hb_000069_300 Hb_001862_050--Hb_000069_300 Hb_047659_010 Hb_047659_010 Hb_001862_050--Hb_047659_010 Hb_020805_040 Hb_020805_040 Hb_118283_010--Hb_020805_040 Hb_000544_200 Hb_000544_200 Hb_118283_010--Hb_000544_200 Hb_000963_050 Hb_000963_050 Hb_118283_010--Hb_000963_050 Hb_012286_060 Hb_012286_060 Hb_118283_010--Hb_012286_060 Hb_004586_040 Hb_004586_040 Hb_118283_010--Hb_004586_040 Hb_003688_010 Hb_003688_010 Hb_118283_010--Hb_003688_010 Hb_033041_010 Hb_033041_010 Hb_003109_010--Hb_033041_010 Hb_007632_080 Hb_007632_080 Hb_003109_010--Hb_007632_080 Hb_003109_010--Hb_002232_310 Hb_001584_360 Hb_001584_360 Hb_003109_010--Hb_001584_360 Hb_101133_050 Hb_101133_050 Hb_003109_010--Hb_101133_050 Hb_007943_180 Hb_007943_180 Hb_003109_010--Hb_007943_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.970031 0.36343 8.13344 4.98372 0.0671463 0.887779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35844 0.146674 0.107934 0.997859 1.20387

CAGE analysis