Hb_004129_060

Information

Type -
Description -
Location Contig4129: 51596-54112
Sequence    

Annotation

kegg
ID rcu:RCOM_0696260
description triacylglycerol lipase, putative
nr
ID XP_002526649.1
description triacylglycerol lipase, putative [Ricinus communis]
swissprot
ID Q680C0
description GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1
trembl
ID B9SKY0
description Triacylglycerol lipase, putative OS=Ricinus communis GN=RCOM_0696260 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gdsl esterase lipase at4g10955-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40889: 52399-52593 , PASA_asmbl_40891: 54620-58386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_060 0.0 - - triacylglycerol lipase, putative [Ricinus communis]
2 Hb_001862_050 0.1033136979 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
3 Hb_000936_030 0.1120112243 - - hypothetical protein RCOM_0615680 [Ricinus communis]
4 Hb_003020_190 0.1224199857 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
5 Hb_000190_220 0.1269542616 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
6 Hb_001755_040 0.1316680323 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
7 Hb_003109_010 0.1339153696 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
8 Hb_000742_180 0.1369850704 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
9 Hb_047659_010 0.1422711833 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002311_090 0.143956585 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
11 Hb_012150_040 0.1448190744 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000956_050 0.1458149987 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
13 Hb_000753_170 0.1484311003 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000638_240 0.1484514028 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Prunus mume]
15 Hb_000107_360 0.1485605985 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
16 Hb_000567_290 0.1502554505 - - hypothetical protein RCOM_0303940 [Ricinus communis]
17 Hb_000964_050 0.1511987801 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
18 Hb_003813_090 0.15131054 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
19 Hb_101133_050 0.1515392888 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
20 Hb_000260_380 0.1518355395 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]

Gene co-expression network

sample Hb_004129_060 Hb_004129_060 Hb_001862_050 Hb_001862_050 Hb_004129_060--Hb_001862_050 Hb_000936_030 Hb_000936_030 Hb_004129_060--Hb_000936_030 Hb_003020_190 Hb_003020_190 Hb_004129_060--Hb_003020_190 Hb_000190_220 Hb_000190_220 Hb_004129_060--Hb_000190_220 Hb_001755_040 Hb_001755_040 Hb_004129_060--Hb_001755_040 Hb_003109_010 Hb_003109_010 Hb_004129_060--Hb_003109_010 Hb_002965_160 Hb_002965_160 Hb_001862_050--Hb_002965_160 Hb_001862_050--Hb_003020_190 Hb_006133_020 Hb_006133_020 Hb_001862_050--Hb_006133_020 Hb_000069_300 Hb_000069_300 Hb_001862_050--Hb_000069_300 Hb_047659_010 Hb_047659_010 Hb_001862_050--Hb_047659_010 Hb_000936_030--Hb_001755_040 Hb_010705_040 Hb_010705_040 Hb_000936_030--Hb_010705_040 Hb_002205_180 Hb_002205_180 Hb_000936_030--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_000936_030--Hb_002232_310 Hb_004102_090 Hb_004102_090 Hb_000936_030--Hb_004102_090 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_003020_190--Hb_071674_010 Hb_003020_190--Hb_006133_020 Hb_000991_030 Hb_000991_030 Hb_003020_190--Hb_000991_030 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_000956_050 Hb_000956_050 Hb_000190_220--Hb_000956_050 Hb_000139_280 Hb_000139_280 Hb_000190_220--Hb_000139_280 Hb_002311_090 Hb_002311_090 Hb_000190_220--Hb_002311_090 Hb_010436_080 Hb_010436_080 Hb_000190_220--Hb_010436_080 Hb_000190_220--Hb_007943_180 Hb_006970_130 Hb_006970_130 Hb_000190_220--Hb_006970_130 Hb_001755_040--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_001755_040--Hb_004109_100 Hb_007574_020 Hb_007574_020 Hb_001755_040--Hb_007574_020 Hb_003935_090 Hb_003935_090 Hb_001755_040--Hb_003935_090 Hb_001755_040--Hb_010705_040 Hb_033041_010 Hb_033041_010 Hb_003109_010--Hb_033041_010 Hb_007632_080 Hb_007632_080 Hb_003109_010--Hb_007632_080 Hb_003109_010--Hb_002232_310 Hb_001584_360 Hb_001584_360 Hb_003109_010--Hb_001584_360 Hb_101133_050 Hb_101133_050 Hb_003109_010--Hb_101133_050 Hb_003109_010--Hb_007943_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.469185 0.610334 11.3329 7.23158 0.422867 0.124852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.293011 0.345751 0 0.772147 1.91684

CAGE analysis