Hb_002681_030

Information

Type -
Description -
Location Contig2681: 22681-23765
Sequence    

Annotation

kegg
ID rcu:RCOM_1064690
description hypothetical protein
nr
ID XP_012071974.1
description PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
swissprot
ID Q9M1X2
description Fatty-acid-binding protein 1 OS=Arabidopsis thaliana GN=FAP1 PE=1 SV=1
trembl
ID A0A067LDC7
description Chalcone-flavonone isomerase family protein OS=Jatropha curcas GN=JCGZ_10247 PE=3 SV=1
Gene Ontology
ID GO:0016872
description fatty-acid-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27914: 22723-23150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_030 0.0 - - PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
2 Hb_001300_210 0.1695394408 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
3 Hb_000684_240 0.2093875798 - - hypothetical protein RCOM_0819620 [Ricinus communis]
4 Hb_004228_080 0.2199739733 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
5 Hb_032208_020 0.2241334823 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
6 Hb_000326_040 0.2350477381 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
7 Hb_007432_030 0.2431846234 - - acyl-CoA thioesterase, putative [Ricinus communis]
8 Hb_001960_040 0.2540235582 - - PREDICTED: CTP synthase [Jatropha curcas]
9 Hb_000816_130 0.2554291012 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
10 Hb_003927_120 0.255682374 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
11 Hb_001776_220 0.2596388231 - - -
12 Hb_100414_010 0.2623737026 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
13 Hb_000421_180 0.2631181446 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000926_020 0.2659228448 - - -
15 Hb_002518_060 0.2685478287 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
16 Hb_000331_250 0.2702134853 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
17 Hb_085226_010 0.2729933918 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
18 Hb_003688_050 0.273869577 - - PREDICTED: uncharacterized protein LOC105640616 isoform X2 [Jatropha curcas]
19 Hb_003750_070 0.2740499851 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
20 Hb_004531_070 0.2757300877 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]

Gene co-expression network

sample Hb_002681_030 Hb_002681_030 Hb_001300_210 Hb_001300_210 Hb_002681_030--Hb_001300_210 Hb_000684_240 Hb_000684_240 Hb_002681_030--Hb_000684_240 Hb_004228_080 Hb_004228_080 Hb_002681_030--Hb_004228_080 Hb_032208_020 Hb_032208_020 Hb_002681_030--Hb_032208_020 Hb_000326_040 Hb_000326_040 Hb_002681_030--Hb_000326_040 Hb_007432_030 Hb_007432_030 Hb_002681_030--Hb_007432_030 Hb_004545_020 Hb_004545_020 Hb_001300_210--Hb_004545_020 Hb_001300_210--Hb_032208_020 Hb_003927_120 Hb_003927_120 Hb_001300_210--Hb_003927_120 Hb_003750_070 Hb_003750_070 Hb_001300_210--Hb_003750_070 Hb_001300_210--Hb_004228_080 Hb_006787_050 Hb_006787_050 Hb_000684_240--Hb_006787_050 Hb_000684_240--Hb_000326_040 Hb_000926_020 Hb_000926_020 Hb_000684_240--Hb_000926_020 Hb_005211_160 Hb_005211_160 Hb_000684_240--Hb_005211_160 Hb_000421_180 Hb_000421_180 Hb_000684_240--Hb_000421_180 Hb_004228_080--Hb_007432_030 Hb_020805_080 Hb_020805_080 Hb_004228_080--Hb_020805_080 Hb_002183_070 Hb_002183_070 Hb_004228_080--Hb_002183_070 Hb_004934_030 Hb_004934_030 Hb_004228_080--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_004228_080--Hb_002374_570 Hb_003607_150 Hb_003607_150 Hb_004228_080--Hb_003607_150 Hb_032208_020--Hb_003750_070 Hb_032208_020--Hb_004228_080 Hb_032208_020--Hb_004545_020 Hb_001252_240 Hb_001252_240 Hb_032208_020--Hb_001252_240 Hb_000326_040--Hb_000926_020 Hb_010174_080 Hb_010174_080 Hb_000326_040--Hb_010174_080 Hb_000094_280 Hb_000094_280 Hb_000326_040--Hb_000094_280 Hb_003862_050 Hb_003862_050 Hb_000326_040--Hb_003862_050 Hb_000000_210 Hb_000000_210 Hb_000326_040--Hb_000000_210 Hb_000025_030 Hb_000025_030 Hb_000326_040--Hb_000025_030 Hb_001277_070 Hb_001277_070 Hb_007432_030--Hb_001277_070 Hb_007432_030--Hb_003607_150 Hb_002685_040 Hb_002685_040 Hb_007432_030--Hb_002685_040 Hb_004931_090 Hb_004931_090 Hb_007432_030--Hb_004931_090 Hb_165132_010 Hb_165132_010 Hb_007432_030--Hb_165132_010 Hb_112798_030 Hb_112798_030 Hb_007432_030--Hb_112798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.737268 0.0239507 0.492452 0.177079 0.0287047 0.203921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.262967 0.310164 0.374706 0.0627288 0

CAGE analysis