Hb_010174_080

Information

Type -
Description -
Location Contig10174: 80572-81666
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_080 0.0 - - -
2 Hb_002102_020 0.1126389532 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
3 Hb_000326_040 0.1377255481 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
4 Hb_004800_250 0.1618447121 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
5 Hb_004586_210 0.1644539128 - - transcription factor, putative [Ricinus communis]
6 Hb_000856_190 0.1702464013 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
7 Hb_000215_080 0.1710389715 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
8 Hb_012762_030 0.1751031019 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
9 Hb_004204_170 0.1791721713 - - synaptosomal associated protein, putative [Ricinus communis]
10 Hb_001946_410 0.1858635429 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
11 Hb_000926_020 0.1862024586 - - -
12 Hb_000723_200 0.1866092372 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
13 Hb_000983_090 0.1880851397 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
14 Hb_000025_030 0.1885011407 - - transcription factor, putative [Ricinus communis]
15 Hb_000002_400 0.1889179197 transcription factor TF Family: Orphans PREDICTED: ethylene receptor 2 [Jatropha curcas]
16 Hb_003688_050 0.1897077264 - - PREDICTED: uncharacterized protein LOC105640616 isoform X2 [Jatropha curcas]
17 Hb_000818_010 0.1912503686 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
18 Hb_031862_130 0.1963836118 - - transcription factor, putative [Ricinus communis]
19 Hb_011519_010 0.1991498401 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
20 Hb_000479_150 0.1996684406 - - glycosyl transferase family 8 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_010174_080 Hb_010174_080 Hb_002102_020 Hb_002102_020 Hb_010174_080--Hb_002102_020 Hb_000326_040 Hb_000326_040 Hb_010174_080--Hb_000326_040 Hb_004800_250 Hb_004800_250 Hb_010174_080--Hb_004800_250 Hb_004586_210 Hb_004586_210 Hb_010174_080--Hb_004586_210 Hb_000856_190 Hb_000856_190 Hb_010174_080--Hb_000856_190 Hb_000215_080 Hb_000215_080 Hb_010174_080--Hb_000215_080 Hb_002102_020--Hb_000856_190 Hb_000818_010 Hb_000818_010 Hb_002102_020--Hb_000818_010 Hb_000025_030 Hb_000025_030 Hb_002102_020--Hb_000025_030 Hb_000019_150 Hb_000019_150 Hb_002102_020--Hb_000019_150 Hb_000479_150 Hb_000479_150 Hb_002102_020--Hb_000479_150 Hb_000926_020 Hb_000926_020 Hb_000326_040--Hb_000926_020 Hb_000094_280 Hb_000094_280 Hb_000326_040--Hb_000094_280 Hb_003862_050 Hb_003862_050 Hb_000326_040--Hb_003862_050 Hb_000000_210 Hb_000000_210 Hb_000326_040--Hb_000000_210 Hb_000326_040--Hb_000025_030 Hb_000185_070 Hb_000185_070 Hb_004800_250--Hb_000185_070 Hb_180424_010 Hb_180424_010 Hb_004800_250--Hb_180424_010 Hb_000010_240 Hb_000010_240 Hb_004800_250--Hb_000010_240 Hb_012762_030 Hb_012762_030 Hb_004800_250--Hb_012762_030 Hb_005488_140 Hb_005488_140 Hb_004800_250--Hb_005488_140 Hb_000853_430 Hb_000853_430 Hb_004800_250--Hb_000853_430 Hb_002110_020 Hb_002110_020 Hb_004586_210--Hb_002110_020 Hb_031862_130 Hb_031862_130 Hb_004586_210--Hb_031862_130 Hb_027393_030 Hb_027393_030 Hb_004586_210--Hb_027393_030 Hb_000116_010 Hb_000116_010 Hb_004586_210--Hb_000116_010 Hb_000007_180 Hb_000007_180 Hb_004586_210--Hb_000007_180 Hb_004204_170 Hb_004204_170 Hb_004586_210--Hb_004204_170 Hb_000856_190--Hb_004204_170 Hb_000983_090 Hb_000983_090 Hb_000856_190--Hb_000983_090 Hb_000856_190--Hb_000818_010 Hb_000334_220 Hb_000334_220 Hb_000856_190--Hb_000334_220 Hb_000085_100 Hb_000085_100 Hb_000856_190--Hb_000085_100 Hb_000856_190--Hb_012762_030 Hb_000215_080--Hb_031862_130 Hb_008695_140 Hb_008695_140 Hb_000215_080--Hb_008695_140 Hb_001946_410 Hb_001946_410 Hb_000215_080--Hb_001946_410 Hb_005285_020 Hb_005285_020 Hb_000215_080--Hb_005285_020 Hb_005542_060 Hb_005542_060 Hb_000215_080--Hb_005542_060 Hb_000069_170 Hb_000069_170 Hb_000215_080--Hb_000069_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28281 1.33368 2.42453 0.851872 0.543697 0.730405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.529252 1.10988 3.29174 0.690253 0.468694

CAGE analysis