Hb_002102_020

Information

Type -
Description -
Location Contig2102: 3690-5229
Sequence    

Annotation

kegg
ID rcu:RCOM_1373730
description Flavin-containing amine oxidase domain-containing protein, putative (EC:1.4.3.2)
nr
ID XP_012085923.1
description PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
swissprot
ID Q8VXV7
description Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1
trembl
ID A0A067K3D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22284 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lysine-specific histone demethylase 1 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21758: 4318-4777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002102_020 0.0 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
2 Hb_010174_080 0.1126389532 - - -
3 Hb_000856_190 0.1474295009 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
4 Hb_000818_010 0.15493746 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
5 Hb_000025_030 0.1600720739 - - transcription factor, putative [Ricinus communis]
6 Hb_000019_150 0.1623891607 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
7 Hb_000479_150 0.1625355777 - - glycosyl transferase family 8 family protein [Populus trichocarpa]
8 Hb_000723_200 0.1637139726 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
9 Hb_001817_150 0.1671312122 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_000326_040 0.1705909542 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
11 Hb_004204_170 0.1711301703 - - synaptosomal associated protein, putative [Ricinus communis]
12 Hb_004800_250 0.174083201 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
13 Hb_024071_010 0.1783640569 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_000926_020 0.1794689192 - - -
15 Hb_000808_050 0.1813992512 - - exonuclease, putative [Ricinus communis]
16 Hb_029799_010 0.1814420022 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_000187_090 0.1834183105 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
18 Hb_001221_170 0.1845380453 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
19 Hb_001946_410 0.1846759175 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
20 Hb_011942_070 0.1851907929 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]

Gene co-expression network

sample Hb_002102_020 Hb_002102_020 Hb_010174_080 Hb_010174_080 Hb_002102_020--Hb_010174_080 Hb_000856_190 Hb_000856_190 Hb_002102_020--Hb_000856_190 Hb_000818_010 Hb_000818_010 Hb_002102_020--Hb_000818_010 Hb_000025_030 Hb_000025_030 Hb_002102_020--Hb_000025_030 Hb_000019_150 Hb_000019_150 Hb_002102_020--Hb_000019_150 Hb_000479_150 Hb_000479_150 Hb_002102_020--Hb_000479_150 Hb_000326_040 Hb_000326_040 Hb_010174_080--Hb_000326_040 Hb_004800_250 Hb_004800_250 Hb_010174_080--Hb_004800_250 Hb_004586_210 Hb_004586_210 Hb_010174_080--Hb_004586_210 Hb_010174_080--Hb_000856_190 Hb_000215_080 Hb_000215_080 Hb_010174_080--Hb_000215_080 Hb_004204_170 Hb_004204_170 Hb_000856_190--Hb_004204_170 Hb_000983_090 Hb_000983_090 Hb_000856_190--Hb_000983_090 Hb_000856_190--Hb_000818_010 Hb_000334_220 Hb_000334_220 Hb_000856_190--Hb_000334_220 Hb_000085_100 Hb_000085_100 Hb_000856_190--Hb_000085_100 Hb_012762_030 Hb_012762_030 Hb_000856_190--Hb_012762_030 Hb_024071_010 Hb_024071_010 Hb_000818_010--Hb_024071_010 Hb_000661_290 Hb_000661_290 Hb_000818_010--Hb_000661_290 Hb_000818_010--Hb_000983_090 Hb_000398_010 Hb_000398_010 Hb_000818_010--Hb_000398_010 Hb_005016_160 Hb_005016_160 Hb_000818_010--Hb_005016_160 Hb_000025_030--Hb_000019_150 Hb_000808_050 Hb_000808_050 Hb_000025_030--Hb_000808_050 Hb_000094_280 Hb_000094_280 Hb_000025_030--Hb_000094_280 Hb_001143_190 Hb_001143_190 Hb_000025_030--Hb_001143_190 Hb_001450_050 Hb_001450_050 Hb_000025_030--Hb_001450_050 Hb_007416_330 Hb_007416_330 Hb_000025_030--Hb_007416_330 Hb_001472_060 Hb_001472_060 Hb_000019_150--Hb_001472_060 Hb_000019_150--Hb_001143_190 Hb_000019_150--Hb_000808_050 Hb_004007_220 Hb_004007_220 Hb_000019_150--Hb_004007_220 Hb_010931_070 Hb_010931_070 Hb_000019_150--Hb_010931_070 Hb_030827_020 Hb_030827_020 Hb_000479_150--Hb_030827_020 Hb_004357_020 Hb_004357_020 Hb_000479_150--Hb_004357_020 Hb_000479_150--Hb_000334_220 Hb_002267_140 Hb_002267_140 Hb_000479_150--Hb_002267_140 Hb_138596_010 Hb_138596_010 Hb_000479_150--Hb_138596_010 Hb_002843_120 Hb_002843_120 Hb_000479_150--Hb_002843_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.525413 0.280056 0.546506 0.172059 0.288057 0.251883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114303 0.14986 0.726723 0.143941 0.124411

CAGE analysis