Hb_000398_010

Information

Type -
Description -
Location Contig398: 8782-10293
Sequence    

Annotation

kegg
ID rcu:RCOM_1248090
description hypothetical protein
nr
ID XP_002527735.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SP16
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1248090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39644: 8157-10419 , PASA_asmbl_39645: 8564-11010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005016_160 0.0887869477 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
3 Hb_000818_010 0.0918252246 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
4 Hb_000676_010 0.0982366774 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
5 Hb_005541_010 0.0995255186 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
6 Hb_008725_260 0.1025755513 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
7 Hb_000230_120 0.1034214601 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
8 Hb_000007_180 0.1043442892 - - hypothetical protein PRUPE_ppb024585mg, partial [Prunus persica]
9 Hb_029799_010 0.1048353392 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_001141_390 0.1056515073 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
11 Hb_000661_290 0.1065402609 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
12 Hb_012564_030 0.1065778937 - - coronatine-insensitive 1 [Hevea brasiliensis]
13 Hb_000125_170 0.1085463924 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
14 Hb_031527_040 0.1088221882 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
15 Hb_000983_090 0.1092485113 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
16 Hb_001621_150 0.1095218162 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
17 Hb_003052_140 0.1098115059 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
18 Hb_000334_220 0.1104627655 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
19 Hb_004204_170 0.1107025225 - - synaptosomal associated protein, putative [Ricinus communis]
20 Hb_000331_670 0.1128204039 - - PREDICTED: protein tipD [Jatropha curcas]

Gene co-expression network

sample Hb_000398_010 Hb_000398_010 Hb_005016_160 Hb_005016_160 Hb_000398_010--Hb_005016_160 Hb_000818_010 Hb_000818_010 Hb_000398_010--Hb_000818_010 Hb_000676_010 Hb_000676_010 Hb_000398_010--Hb_000676_010 Hb_005541_010 Hb_005541_010 Hb_000398_010--Hb_005541_010 Hb_008725_260 Hb_008725_260 Hb_000398_010--Hb_008725_260 Hb_000230_120 Hb_000230_120 Hb_000398_010--Hb_000230_120 Hb_005016_160--Hb_005541_010 Hb_000334_220 Hb_000334_220 Hb_005016_160--Hb_000334_220 Hb_012055_060 Hb_012055_060 Hb_005016_160--Hb_012055_060 Hb_003052_140 Hb_003052_140 Hb_005016_160--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_005016_160--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_005016_160--Hb_000336_250 Hb_024071_010 Hb_024071_010 Hb_000818_010--Hb_024071_010 Hb_000661_290 Hb_000661_290 Hb_000818_010--Hb_000661_290 Hb_000856_190 Hb_000856_190 Hb_000818_010--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_000818_010--Hb_000983_090 Hb_000818_010--Hb_005016_160 Hb_002035_120 Hb_002035_120 Hb_000676_010--Hb_002035_120 Hb_002110_150 Hb_002110_150 Hb_000676_010--Hb_002110_150 Hb_001247_250 Hb_001247_250 Hb_000676_010--Hb_001247_250 Hb_000140_230 Hb_000140_230 Hb_000676_010--Hb_000140_230 Hb_050622_050 Hb_050622_050 Hb_000676_010--Hb_050622_050 Hb_001818_070 Hb_001818_070 Hb_000676_010--Hb_001818_070 Hb_140506_010 Hb_140506_010 Hb_005541_010--Hb_140506_010 Hb_005541_010--Hb_003052_140 Hb_005541_010--Hb_000334_220 Hb_005541_010--Hb_012564_030 Hb_002411_030 Hb_002411_030 Hb_005541_010--Hb_002411_030 Hb_008725_260--Hb_002110_150 Hb_002046_180 Hb_002046_180 Hb_008725_260--Hb_002046_180 Hb_000866_220 Hb_000866_220 Hb_008725_260--Hb_000866_220 Hb_009178_030 Hb_009178_030 Hb_008725_260--Hb_009178_030 Hb_000876_070 Hb_000876_070 Hb_008725_260--Hb_000876_070 Hb_007532_030 Hb_007532_030 Hb_008725_260--Hb_007532_030 Hb_000181_070 Hb_000181_070 Hb_000230_120--Hb_000181_070 Hb_000512_060 Hb_000512_060 Hb_000230_120--Hb_000512_060 Hb_000125_170 Hb_000125_170 Hb_000230_120--Hb_000125_170 Hb_001488_070 Hb_001488_070 Hb_000230_120--Hb_001488_070 Hb_000125_130 Hb_000125_130 Hb_000230_120--Hb_000125_130 Hb_000230_120--Hb_009178_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.0941 40.8997 21.7734 22.654 35.969 25.522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6299 34.0824 56.5501 11.2612 14.7747

CAGE analysis