Hb_024071_010

Information

Type -
Description -
Location Contig24071: 1606-3789
Sequence    

Annotation

kegg
ID rcu:RCOM_0533080
description ADP-ribosylation factor, putative
nr
ID XP_002521502.1
description ADP-ribosylation factor, putative [Ricinus communis]
swissprot
ID Q9ZPX1
description ADP-ribosylation factor-like protein 2 OS=Arabidopsis thaliana GN=ARL2 PE=2 SV=1
trembl
ID B9S683
description ADP-ribosylation factor, putative OS=Ricinus communis GN=RCOM_0533080 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25223: 1551-2537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024071_010 0.0 - - ADP-ribosylation factor, putative [Ricinus communis]
2 Hb_000818_010 0.0797345122 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
3 Hb_010795_010 0.0994031905 - - protein with unknown function [Ricinus communis]
4 Hb_004678_040 0.1014503815 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
5 Hb_000453_050 0.1039146247 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
6 Hb_000010_400 0.1042700638 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
7 Hb_006817_010 0.1043549364 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
8 Hb_000866_010 0.1059114333 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000853_430 0.1081920032 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
10 Hb_000917_060 0.1114561227 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
11 Hb_027295_050 0.1126617301 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
12 Hb_000926_310 0.1129362665 - - uncharacterized protein LOC100500241 [Glycine max]
13 Hb_002256_030 0.1132859321 - - conserved hypothetical protein [Ricinus communis]
14 Hb_017358_030 0.1135004203 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
15 Hb_003862_050 0.1136488081 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
16 Hb_000661_290 0.1149053875 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
17 Hb_000008_470 0.1151548975 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
18 Hb_077562_050 0.1161566993 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
19 Hb_000477_030 0.1164581047 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
20 Hb_009646_030 0.1169622043 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_024071_010 Hb_024071_010 Hb_000818_010 Hb_000818_010 Hb_024071_010--Hb_000818_010 Hb_010795_010 Hb_010795_010 Hb_024071_010--Hb_010795_010 Hb_004678_040 Hb_004678_040 Hb_024071_010--Hb_004678_040 Hb_000453_050 Hb_000453_050 Hb_024071_010--Hb_000453_050 Hb_000010_400 Hb_000010_400 Hb_024071_010--Hb_000010_400 Hb_006817_010 Hb_006817_010 Hb_024071_010--Hb_006817_010 Hb_000661_290 Hb_000661_290 Hb_000818_010--Hb_000661_290 Hb_000856_190 Hb_000856_190 Hb_000818_010--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_000818_010--Hb_000983_090 Hb_000398_010 Hb_000398_010 Hb_000818_010--Hb_000398_010 Hb_005016_160 Hb_005016_160 Hb_000818_010--Hb_005016_160 Hb_002518_140 Hb_002518_140 Hb_010795_010--Hb_002518_140 Hb_000030_010 Hb_000030_010 Hb_010795_010--Hb_000030_010 Hb_171900_080 Hb_171900_080 Hb_010795_010--Hb_171900_080 Hb_000123_120 Hb_000123_120 Hb_010795_010--Hb_000123_120 Hb_000392_300 Hb_000392_300 Hb_010795_010--Hb_000392_300 Hb_019654_100 Hb_019654_100 Hb_010795_010--Hb_019654_100 Hb_000008_470 Hb_000008_470 Hb_004678_040--Hb_000008_470 Hb_000521_320 Hb_000521_320 Hb_004678_040--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_004678_040--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_004678_040--Hb_000853_430 Hb_025645_010 Hb_025645_010 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030 Hb_029142_060 Hb_029142_060 Hb_000453_050--Hb_029142_060 Hb_027295_050 Hb_027295_050 Hb_000453_050--Hb_027295_050 Hb_000917_060 Hb_000917_060 Hb_000453_050--Hb_000917_060 Hb_000205_190 Hb_000205_190 Hb_000453_050--Hb_000205_190 Hb_000866_010 Hb_000866_010 Hb_000453_050--Hb_000866_010 Hb_000866_410 Hb_000866_410 Hb_000453_050--Hb_000866_410 Hb_011995_010 Hb_011995_010 Hb_000010_400--Hb_011995_010 Hb_007813_040 Hb_007813_040 Hb_000010_400--Hb_007813_040 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000010_400--Hb_000302_270 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000010_400--Hb_000521_320 Hb_006817_010--Hb_000866_010 Hb_012725_070 Hb_012725_070 Hb_006817_010--Hb_012725_070 Hb_000808_050 Hb_000808_050 Hb_006817_010--Hb_000808_050 Hb_000390_170 Hb_000390_170 Hb_006817_010--Hb_000390_170 Hb_000690_160 Hb_000690_160 Hb_006817_010--Hb_000690_160 Hb_000053_110 Hb_000053_110 Hb_006817_010--Hb_000053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0314 9.11512 10.8231 5.31598 13.6116 7.5738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.54756 10.618 14.7977 3.36396 6.49315

CAGE analysis