Hb_004586_210

Information

Type -
Description -
Location Contig4586: 235980-242516
Sequence    

Annotation

kegg
ID rcu:RCOM_1039060
description transcription factor, putative
nr
ID XP_002514013.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FGB0
description Transcription factor bHLH145 OS=Arabidopsis thaliana GN=BHLH145 PE=2 SV=1
trembl
ID B9RJU4
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1039060 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh145

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43543: 238105-242730 , PASA_asmbl_43544: 239788-240017 , PASA_asmbl_43545: 238700-239302
cDNA
(Sanger)
(ID:Location)		 019_O11.ab1: 240305-241068

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_210 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_002110_020 0.1169938542 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
3 Hb_031862_130 0.1491777541 - - transcription factor, putative [Ricinus communis]
4 Hb_027393_030 0.1499958909 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
5 Hb_000116_010 0.1542288387 - - isocitrate dehydrogenase, putative [Ricinus communis]
6 Hb_000007_180 0.1578080805 - - hypothetical protein PRUPE_ppb024585mg, partial [Prunus persica]
7 Hb_004204_170 0.1582495395 - - synaptosomal associated protein, putative [Ricinus communis]
8 Hb_000398_010 0.1606775552 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000592_020 0.1617349641 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
10 Hb_000307_030 0.163551941 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
11 Hb_010174_080 0.1644539128 - - -
12 Hb_000417_310 0.1646486378 - - uncharacterized protein LOC100272531 [Zea mays]
13 Hb_005228_070 0.1671316549 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
14 Hb_000063_140 0.1694174695 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
15 Hb_000723_200 0.1699208665 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
16 Hb_000092_010 0.1702900659 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
17 Hb_029799_010 0.1724721878 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_001277_270 0.1725425834 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
19 Hb_005542_060 0.1730725798 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_006711_060 0.1731354504 - - Tubulin beta-1 chain [Morus notabilis]

Gene co-expression network

sample Hb_004586_210 Hb_004586_210 Hb_002110_020 Hb_002110_020 Hb_004586_210--Hb_002110_020 Hb_031862_130 Hb_031862_130 Hb_004586_210--Hb_031862_130 Hb_027393_030 Hb_027393_030 Hb_004586_210--Hb_027393_030 Hb_000116_010 Hb_000116_010 Hb_004586_210--Hb_000116_010 Hb_000007_180 Hb_000007_180 Hb_004586_210--Hb_000007_180 Hb_004204_170 Hb_004204_170 Hb_004586_210--Hb_004204_170 Hb_002045_180 Hb_002045_180 Hb_002110_020--Hb_002045_180 Hb_001314_020 Hb_001314_020 Hb_002110_020--Hb_001314_020 Hb_002110_020--Hb_000116_010 Hb_004410_100 Hb_004410_100 Hb_002110_020--Hb_004410_100 Hb_004785_140 Hb_004785_140 Hb_002110_020--Hb_004785_140 Hb_000215_080 Hb_000215_080 Hb_031862_130--Hb_000215_080 Hb_000069_170 Hb_000069_170 Hb_031862_130--Hb_000069_170 Hb_008695_140 Hb_008695_140 Hb_031862_130--Hb_008695_140 Hb_000011_330 Hb_000011_330 Hb_031862_130--Hb_000011_330 Hb_000723_200 Hb_000723_200 Hb_031862_130--Hb_000723_200 Hb_005542_060 Hb_005542_060 Hb_031862_130--Hb_005542_060 Hb_005545_100 Hb_005545_100 Hb_027393_030--Hb_005545_100 Hb_000367_260 Hb_000367_260 Hb_027393_030--Hb_000367_260 Hb_004375_150 Hb_004375_150 Hb_027393_030--Hb_004375_150 Hb_027393_030--Hb_005542_060 Hb_005228_070 Hb_005228_070 Hb_027393_030--Hb_005228_070 Hb_000239_020 Hb_000239_020 Hb_027393_030--Hb_000239_020 Hb_006647_020 Hb_006647_020 Hb_000116_010--Hb_006647_020 Hb_003976_030 Hb_003976_030 Hb_000116_010--Hb_003976_030 Hb_000063_140 Hb_000063_140 Hb_000116_010--Hb_000063_140 Hb_001617_050 Hb_001617_050 Hb_000116_010--Hb_001617_050 Hb_001892_020 Hb_001892_020 Hb_000116_010--Hb_001892_020 Hb_000116_010--Hb_004204_170 Hb_000398_010 Hb_000398_010 Hb_000007_180--Hb_000398_010 Hb_000178_130 Hb_000178_130 Hb_000007_180--Hb_000178_130 Hb_000007_180--Hb_004204_170 Hb_001799_210 Hb_001799_210 Hb_000007_180--Hb_001799_210 Hb_000007_180--Hb_001892_020 Hb_001377_260 Hb_001377_260 Hb_000007_180--Hb_001377_260 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_000085_100 Hb_000085_100 Hb_004204_170--Hb_000085_100 Hb_004204_170--Hb_001617_050 Hb_001178_140 Hb_001178_140 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.98 105.976 69.362 79.5029 41.4701 56.3106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.781 87.4415 267.497 20.8526 29.2449

CAGE analysis