Hb_000007_180

Information

Type -
Description -
Location Contig7: 170811-173887
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb024585mg
description hypothetical protein
nr
ID XP_007221770.1
description hypothetical protein PRUPE_ppb024585mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5XAJ1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb024585mg PE=4 SV=1
Gene Ontology
ID GO:0004014
description samdc uorf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54744: 170820-173383
cDNA
(Sanger)
(ID:Location)		 011_M16.ab1: 171907-173356 , 032_D19.ab1: 171990-173383 , 037_H02.ab1: 171851-173356 , 052_J02.ab1: 171980-173356

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_180 0.0 - - hypothetical protein PRUPE_ppb024585mg, partial [Prunus persica]
2 Hb_000398_010 0.1043442892 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000178_130 0.1188851002 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
4 Hb_004204_170 0.1211053149 - - synaptosomal associated protein, putative [Ricinus communis]
5 Hb_001799_210 0.1239307179 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
6 Hb_001892_020 0.1244050574 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_001377_260 0.1258520734 - - protein with unknown function [Ricinus communis]
8 Hb_008725_260 0.1320115985 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
9 Hb_000430_020 0.1323320576 - - -
10 Hb_003376_350 0.1325575035 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
11 Hb_021576_110 0.134777974 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
12 Hb_029799_010 0.135792771 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
13 Hb_000011_400 0.1365605267 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
14 Hb_001617_050 0.1367537151 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
15 Hb_005051_020 0.1377026686 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
16 Hb_000983_090 0.1381113525 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
17 Hb_003082_010 0.1383762021 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
18 Hb_000331_670 0.1385957872 - - PREDICTED: protein tipD [Jatropha curcas]
19 Hb_001488_070 0.1394872398 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010128_080 0.1400111699 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_180 Hb_000007_180 Hb_000398_010 Hb_000398_010 Hb_000007_180--Hb_000398_010 Hb_000178_130 Hb_000178_130 Hb_000007_180--Hb_000178_130 Hb_004204_170 Hb_004204_170 Hb_000007_180--Hb_004204_170 Hb_001799_210 Hb_001799_210 Hb_000007_180--Hb_001799_210 Hb_001892_020 Hb_001892_020 Hb_000007_180--Hb_001892_020 Hb_001377_260 Hb_001377_260 Hb_000007_180--Hb_001377_260 Hb_005016_160 Hb_005016_160 Hb_000398_010--Hb_005016_160 Hb_000818_010 Hb_000818_010 Hb_000398_010--Hb_000818_010 Hb_000676_010 Hb_000676_010 Hb_000398_010--Hb_000676_010 Hb_005541_010 Hb_005541_010 Hb_000398_010--Hb_005541_010 Hb_008725_260 Hb_008725_260 Hb_000398_010--Hb_008725_260 Hb_000230_120 Hb_000230_120 Hb_000398_010--Hb_000230_120 Hb_005306_190 Hb_005306_190 Hb_000178_130--Hb_005306_190 Hb_000430_020 Hb_000430_020 Hb_000178_130--Hb_000430_020 Hb_004994_140 Hb_004994_140 Hb_000178_130--Hb_004994_140 Hb_000417_040 Hb_000417_040 Hb_000178_130--Hb_000417_040 Hb_003389_040 Hb_003389_040 Hb_000178_130--Hb_003389_040 Hb_001123_060 Hb_001123_060 Hb_000178_130--Hb_001123_060 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_000085_100 Hb_000085_100 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_001178_140 Hb_001178_140 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270 Hb_000465_160 Hb_000465_160 Hb_001799_210--Hb_000465_160 Hb_001009_270 Hb_001009_270 Hb_001799_210--Hb_001009_270 Hb_000003_250 Hb_000003_250 Hb_001799_210--Hb_000003_250 Hb_003177_030 Hb_003177_030 Hb_001799_210--Hb_003177_030 Hb_032208_090 Hb_032208_090 Hb_001799_210--Hb_032208_090 Hb_011344_210 Hb_011344_210 Hb_001799_210--Hb_011344_210 Hb_004907_110 Hb_004907_110 Hb_001892_020--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_001892_020--Hb_000280_080 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_002631_060 Hb_002631_060 Hb_001892_020--Hb_002631_060 Hb_001892_020--Hb_001178_140 Hb_010883_090 Hb_010883_090 Hb_001892_020--Hb_010883_090 Hb_000140_380 Hb_000140_380 Hb_001377_260--Hb_000140_380 Hb_004078_040 Hb_004078_040 Hb_001377_260--Hb_004078_040 Hb_086639_010 Hb_086639_010 Hb_001377_260--Hb_086639_010 Hb_005051_020 Hb_005051_020 Hb_001377_260--Hb_005051_020 Hb_001377_260--Hb_000430_020 Hb_000890_150 Hb_000890_150 Hb_001377_260--Hb_000890_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.188 299.172 174.296 267.303 235.26 140.237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.875 290.738 481.478 126.813 56.0058

CAGE analysis