Hb_001314_020

Information

Type -
Description -
Location Contig1314: 62655-96917
Sequence    

Annotation

kegg
ID rcu:RCOM_0493750
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_012076093.1
description PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SYM4
description Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1
trembl
ID A0A067KEC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11938 PE=4 SV=1
Gene Ontology
ID GO:0003825
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09165: 62760-63137 , PASA_asmbl_09166: 68448-97227 , PASA_asmbl_09167: 93575-93925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001314_020 0.0 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
2 Hb_002045_180 0.0979982596 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
3 Hb_004607_030 0.1023652326 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
4 Hb_000789_220 0.10339505 - - phosphofructokinase [Hevea brasiliensis]
5 Hb_025557_030 0.111019915 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
6 Hb_011030_020 0.1114336368 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
7 Hb_000406_120 0.1140157332 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
8 Hb_000574_350 0.1140264305 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
9 Hb_000592_020 0.1160295216 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
10 Hb_000392_310 0.1224111544 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010608_050 0.1256836137 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
12 Hb_000696_040 0.1259555125 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_004375_150 0.1268451833 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
14 Hb_001338_040 0.1280118671 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000307_030 0.1291210697 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
16 Hb_008695_100 0.1294978549 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
17 Hb_000327_220 0.1295759498 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
18 Hb_010407_180 0.1317296137 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
19 Hb_001189_140 0.1321955346 - - -
20 Hb_168319_030 0.1328945924 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]

Gene co-expression network

sample Hb_001314_020 Hb_001314_020 Hb_002045_180 Hb_002045_180 Hb_001314_020--Hb_002045_180 Hb_004607_030 Hb_004607_030 Hb_001314_020--Hb_004607_030 Hb_000789_220 Hb_000789_220 Hb_001314_020--Hb_000789_220 Hb_025557_030 Hb_025557_030 Hb_001314_020--Hb_025557_030 Hb_011030_020 Hb_011030_020 Hb_001314_020--Hb_011030_020 Hb_000406_120 Hb_000406_120 Hb_001314_020--Hb_000406_120 Hb_002045_180--Hb_000406_120 Hb_000592_020 Hb_000592_020 Hb_002045_180--Hb_000592_020 Hb_000141_020 Hb_000141_020 Hb_002045_180--Hb_000141_020 Hb_007429_030 Hb_007429_030 Hb_002045_180--Hb_007429_030 Hb_002110_020 Hb_002110_020 Hb_002045_180--Hb_002110_020 Hb_001959_190 Hb_001959_190 Hb_004607_030--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_000567_120 Hb_000567_120 Hb_004607_030--Hb_000567_120 Hb_010608_050 Hb_010608_050 Hb_004607_030--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_004607_030--Hb_008695_100 Hb_004607_030--Hb_025557_030 Hb_004705_120 Hb_004705_120 Hb_000789_220--Hb_004705_120 Hb_010174_060 Hb_010174_060 Hb_000789_220--Hb_010174_060 Hb_056753_010 Hb_056753_010 Hb_000789_220--Hb_056753_010 Hb_003687_240 Hb_003687_240 Hb_000789_220--Hb_003687_240 Hb_008616_070 Hb_008616_070 Hb_000789_220--Hb_008616_070 Hb_000318_330 Hb_000318_330 Hb_025557_030--Hb_000318_330 Hb_027472_170 Hb_027472_170 Hb_025557_030--Hb_027472_170 Hb_000019_130 Hb_000019_130 Hb_025557_030--Hb_000019_130 Hb_004375_150 Hb_004375_150 Hb_025557_030--Hb_004375_150 Hb_025557_030--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_000125_030 Hb_000125_030 Hb_000406_120--Hb_000125_030 Hb_000406_120--Hb_000141_020 Hb_006647_020 Hb_006647_020 Hb_000406_120--Hb_006647_020 Hb_010407_180 Hb_010407_180 Hb_000406_120--Hb_010407_180 Hb_002056_060 Hb_002056_060 Hb_000406_120--Hb_002056_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0505 21.1901 5.71508 11.2133 9.55623 10.7779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4349 26.2407 50.3549 9.89329 6.14384

CAGE analysis