Hb_010174_060

Information

Type -
Description -
Location Contig10174: 69889-73328
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01170g
description POPTRDRAFT_1100674; hypothetical protein
nr
ID XP_012085556.1
description PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067JVB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17876 PE=4 SV=1
Gene Ontology
ID GO:0016874
description ultraviolet-b receptor uvr8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00838: 72909-74067 , PASA_asmbl_00839: 69997-74100 , PASA_asmbl_00840: 70018-72387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_060 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
2 Hb_001021_130 0.081831245 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
3 Hb_000069_600 0.1058890121 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
4 Hb_006615_020 0.1077391478 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
5 Hb_000789_220 0.1096343019 - - phosphofructokinase [Hevea brasiliensis]
6 Hb_000010_460 0.1111468649 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
7 Hb_034406_030 0.1117106673 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
8 Hb_000003_040 0.1125390624 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
9 Hb_002374_100 0.1142018067 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
10 Hb_004705_120 0.1146890717 - - ATP binding protein, putative [Ricinus communis]
11 Hb_012114_040 0.1195699917 - - DNA binding protein, putative [Ricinus communis]
12 Hb_001199_050 0.1197625759 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
13 Hb_000010_470 0.1202332133 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
14 Hb_001507_040 0.1247352497 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002216_040 0.1249095935 - - PREDICTED: protein PRD1 [Jatropha curcas]
16 Hb_155764_010 0.126137734 - - -
17 Hb_001663_050 0.1262802551 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
18 Hb_002660_070 0.1264930412 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
19 Hb_002301_230 0.1265622894 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
20 Hb_022181_020 0.1268397297 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010174_060 Hb_010174_060 Hb_001021_130 Hb_001021_130 Hb_010174_060--Hb_001021_130 Hb_000069_600 Hb_000069_600 Hb_010174_060--Hb_000069_600 Hb_006615_020 Hb_006615_020 Hb_010174_060--Hb_006615_020 Hb_000789_220 Hb_000789_220 Hb_010174_060--Hb_000789_220 Hb_000010_460 Hb_000010_460 Hb_010174_060--Hb_000010_460 Hb_034406_030 Hb_034406_030 Hb_010174_060--Hb_034406_030 Hb_003647_060 Hb_003647_060 Hb_001021_130--Hb_003647_060 Hb_007508_090 Hb_007508_090 Hb_001021_130--Hb_007508_090 Hb_074783_010 Hb_074783_010 Hb_001021_130--Hb_074783_010 Hb_000189_560 Hb_000189_560 Hb_001021_130--Hb_000189_560 Hb_001969_090 Hb_001969_090 Hb_001021_130--Hb_001969_090 Hb_001983_020 Hb_001983_020 Hb_000069_600--Hb_001983_020 Hb_022181_020 Hb_022181_020 Hb_000069_600--Hb_022181_020 Hb_035273_030 Hb_035273_030 Hb_000069_600--Hb_035273_030 Hb_000958_110 Hb_000958_110 Hb_000069_600--Hb_000958_110 Hb_003050_220 Hb_003050_220 Hb_000069_600--Hb_003050_220 Hb_089995_010 Hb_089995_010 Hb_000069_600--Hb_089995_010 Hb_001902_140 Hb_001902_140 Hb_006615_020--Hb_001902_140 Hb_000185_030 Hb_000185_030 Hb_006615_020--Hb_000185_030 Hb_000015_040 Hb_000015_040 Hb_006615_020--Hb_000015_040 Hb_000840_250 Hb_000840_250 Hb_006615_020--Hb_000840_250 Hb_001507_040 Hb_001507_040 Hb_006615_020--Hb_001507_040 Hb_001633_210 Hb_001633_210 Hb_006615_020--Hb_001633_210 Hb_004705_120 Hb_004705_120 Hb_000789_220--Hb_004705_120 Hb_001314_020 Hb_001314_020 Hb_000789_220--Hb_001314_020 Hb_056753_010 Hb_056753_010 Hb_000789_220--Hb_056753_010 Hb_003687_240 Hb_003687_240 Hb_000789_220--Hb_003687_240 Hb_008616_070 Hb_008616_070 Hb_000789_220--Hb_008616_070 Hb_002061_040 Hb_002061_040 Hb_000010_460--Hb_002061_040 Hb_010080_090 Hb_010080_090 Hb_000010_460--Hb_010080_090 Hb_172426_040 Hb_172426_040 Hb_000010_460--Hb_172426_040 Hb_000020_060 Hb_000020_060 Hb_000010_460--Hb_000020_060 Hb_001832_010 Hb_001832_010 Hb_000010_460--Hb_001832_010 Hb_000028_590 Hb_000028_590 Hb_000010_460--Hb_000028_590 Hb_000069_420 Hb_000069_420 Hb_034406_030--Hb_000069_420 Hb_001663_050 Hb_001663_050 Hb_034406_030--Hb_001663_050 Hb_003994_260 Hb_003994_260 Hb_034406_030--Hb_003994_260 Hb_034406_030--Hb_001902_140 Hb_003787_010 Hb_003787_010 Hb_034406_030--Hb_003787_010 Hb_007416_320 Hb_007416_320 Hb_034406_030--Hb_007416_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.6396 50.0814 28.8991 30.9573 33.5738 37.1585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
129.722 73.4918 123.234 86.7416 31.9316

CAGE analysis