Hb_000326_040

Information

Type -
Description -
Location Contig326: 50020-54260
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G187900g
description hypothetical protein
nr
ID XP_007148193.1
description hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
swissprot
ID P80269
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Solanum tuberosum PE=1 SV=2
trembl
ID V7BQC1
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G187900g PE=3 SV=1
Gene Ontology
ID GO:0051536
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34298: 52001-54304 , PASA_asmbl_34299: 52637-52849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_040 0.0 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
2 Hb_000926_020 0.1247550207 - - -
3 Hb_010174_080 0.1377255481 - - -
4 Hb_000094_280 0.1423205637 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
5 Hb_003862_050 0.1488074912 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
6 Hb_000000_210 0.1491154907 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
7 Hb_000025_030 0.1502559224 - - transcription factor, putative [Ricinus communis]
8 Hb_004204_170 0.1507928894 - - synaptosomal associated protein, putative [Ricinus communis]
9 Hb_000005_280 0.1524104375 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
10 Hb_003016_020 0.153153697 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
11 Hb_000723_200 0.1542499561 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
12 Hb_004800_250 0.1544689761 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
13 Hb_001847_020 0.1546711499 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
14 Hb_006711_060 0.1568334247 - - Tubulin beta-1 chain [Morus notabilis]
15 Hb_000008_470 0.1574351351 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
16 Hb_000059_360 0.1575944537 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
17 Hb_000062_350 0.1588473835 - - amino acid transporter, putative [Ricinus communis]
18 Hb_004324_070 0.1591874916 - - protein phosphatase 2C [Hevea brasiliensis]
19 Hb_004678_040 0.1592259905 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
20 Hb_000063_140 0.1595085689 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_000326_040 Hb_000326_040 Hb_000926_020 Hb_000926_020 Hb_000326_040--Hb_000926_020 Hb_010174_080 Hb_010174_080 Hb_000326_040--Hb_010174_080 Hb_000094_280 Hb_000094_280 Hb_000326_040--Hb_000094_280 Hb_003862_050 Hb_003862_050 Hb_000326_040--Hb_003862_050 Hb_000000_210 Hb_000000_210 Hb_000326_040--Hb_000000_210 Hb_000025_030 Hb_000025_030 Hb_000326_040--Hb_000025_030 Hb_001847_020 Hb_001847_020 Hb_000926_020--Hb_001847_020 Hb_000721_010 Hb_000721_010 Hb_000926_020--Hb_000721_010 Hb_000008_470 Hb_000008_470 Hb_000926_020--Hb_000008_470 Hb_000123_120 Hb_000123_120 Hb_000926_020--Hb_000123_120 Hb_188279_010 Hb_188279_010 Hb_000926_020--Hb_188279_010 Hb_000926_020--Hb_003862_050 Hb_002102_020 Hb_002102_020 Hb_010174_080--Hb_002102_020 Hb_004800_250 Hb_004800_250 Hb_010174_080--Hb_004800_250 Hb_004586_210 Hb_004586_210 Hb_010174_080--Hb_004586_210 Hb_000856_190 Hb_000856_190 Hb_010174_080--Hb_000856_190 Hb_000215_080 Hb_000215_080 Hb_010174_080--Hb_000215_080 Hb_001579_030 Hb_001579_030 Hb_000094_280--Hb_001579_030 Hb_001799_030 Hb_001799_030 Hb_000094_280--Hb_001799_030 Hb_003528_010 Hb_003528_010 Hb_000094_280--Hb_003528_010 Hb_000300_500 Hb_000300_500 Hb_000094_280--Hb_000300_500 Hb_032808_010 Hb_032808_010 Hb_000094_280--Hb_032808_010 Hb_000094_280--Hb_000025_030 Hb_000175_460 Hb_000175_460 Hb_003862_050--Hb_000175_460 Hb_019654_100 Hb_019654_100 Hb_003862_050--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_180424_010 Hb_180424_010 Hb_000000_210--Hb_180424_010 Hb_048476_110 Hb_048476_110 Hb_000000_210--Hb_048476_110 Hb_011519_010 Hb_011519_010 Hb_000000_210--Hb_011519_010 Hb_000853_430 Hb_000853_430 Hb_000000_210--Hb_000853_430 Hb_004934_030 Hb_004934_030 Hb_000000_210--Hb_004934_030 Hb_004678_040 Hb_004678_040 Hb_000000_210--Hb_004678_040 Hb_000019_150 Hb_000019_150 Hb_000025_030--Hb_000019_150 Hb_000808_050 Hb_000808_050 Hb_000025_030--Hb_000808_050 Hb_001143_190 Hb_001143_190 Hb_000025_030--Hb_001143_190 Hb_001450_050 Hb_001450_050 Hb_000025_030--Hb_001450_050 Hb_007416_330 Hb_007416_330 Hb_000025_030--Hb_007416_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5469 7.81232 22.0665 11.3076 6.88638 13.6205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2467 16.216 34.9212 11.7304 3.83755

CAGE analysis