Hb_000926_020

Information

Type -
Description -
Location Contig926: 31811-34966
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62643: 34533-35032
cDNA
(Sanger)
(ID:Location)		 009_O21.ab1: 34637-34861 , 012_E12.ab1: 34669-34860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_020 0.0 - - -
2 Hb_001847_020 0.0711259481 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
3 Hb_000721_010 0.1017253617 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000008_470 0.1026257101 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
5 Hb_000123_120 0.1075674418 - - actin depolymerizing factor 4 [Hevea brasiliensis]
6 Hb_188279_010 0.1110532541 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
7 Hb_003862_050 0.1118894522 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
8 Hb_004678_040 0.1120745984 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
9 Hb_000853_430 0.1189874307 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
10 Hb_000000_080 0.1229363932 - - lipoate-protein ligase B, putative [Ricinus communis]
11 Hb_134951_010 0.1241908173 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
12 Hb_000326_040 0.1247550207 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
13 Hb_002188_130 0.1247655782 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
14 Hb_004324_070 0.1255845785 - - protein phosphatase 2C [Hevea brasiliensis]
15 Hb_001439_150 0.1266262285 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
16 Hb_000230_200 0.1273906 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
17 Hb_000062_350 0.1273986784 - - amino acid transporter, putative [Ricinus communis]
18 Hb_003069_010 0.1280110788 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
19 Hb_112798_030 0.1286808434 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007951_060 0.1289669946 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_020 Hb_000926_020 Hb_001847_020 Hb_001847_020 Hb_000926_020--Hb_001847_020 Hb_000721_010 Hb_000721_010 Hb_000926_020--Hb_000721_010 Hb_000008_470 Hb_000008_470 Hb_000926_020--Hb_000008_470 Hb_000123_120 Hb_000123_120 Hb_000926_020--Hb_000123_120 Hb_188279_010 Hb_188279_010 Hb_000926_020--Hb_188279_010 Hb_003862_050 Hb_003862_050 Hb_000926_020--Hb_003862_050 Hb_001847_020--Hb_188279_010 Hb_001847_020--Hb_000721_010 Hb_011571_010 Hb_011571_010 Hb_001847_020--Hb_011571_010 Hb_000000_080 Hb_000000_080 Hb_001847_020--Hb_000000_080 Hb_003683_160 Hb_003683_160 Hb_001847_020--Hb_003683_160 Hb_006065_020 Hb_006065_020 Hb_000721_010--Hb_006065_020 Hb_185467_010 Hb_185467_010 Hb_000721_010--Hb_185467_010 Hb_000046_300 Hb_000046_300 Hb_000721_010--Hb_000046_300 Hb_000721_010--Hb_000000_080 Hb_004678_040 Hb_004678_040 Hb_000008_470--Hb_004678_040 Hb_001305_010 Hb_001305_010 Hb_000008_470--Hb_001305_010 Hb_004324_070 Hb_004324_070 Hb_000008_470--Hb_004324_070 Hb_000175_460 Hb_000175_460 Hb_000008_470--Hb_000175_460 Hb_000230_200 Hb_000230_200 Hb_000008_470--Hb_000230_200 Hb_000853_430 Hb_000853_430 Hb_000008_470--Hb_000853_430 Hb_000123_120--Hb_000008_470 Hb_000754_060 Hb_000754_060 Hb_000123_120--Hb_000754_060 Hb_000123_120--Hb_003862_050 Hb_010795_010 Hb_010795_010 Hb_000123_120--Hb_010795_010 Hb_010381_070 Hb_010381_070 Hb_000123_120--Hb_010381_070 Hb_011224_110 Hb_011224_110 Hb_000123_120--Hb_011224_110 Hb_000173_230 Hb_000173_230 Hb_188279_010--Hb_000173_230 Hb_188279_010--Hb_003683_160 Hb_007317_210 Hb_007317_210 Hb_188279_010--Hb_007317_210 Hb_188279_010--Hb_011571_010 Hb_009048_040 Hb_009048_040 Hb_188279_010--Hb_009048_040 Hb_003862_050--Hb_000175_460 Hb_019654_100 Hb_019654_100 Hb_003862_050--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.30255 1.87035 3.42431 1.45993 2.58025 3.40357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39367 4.14219 5.71364 1.55136 1.27093

CAGE analysis