Hb_001847_020

Information

Type -
Description -
Location Contig1847: 32053-33708
Sequence    

Annotation

kegg
ID egr:104446727
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID XP_010058850.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID M1AB05
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007243 PE=4 SV=1
Gene Ontology
ID GO:0016772
description leucine-rich repeat protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001847_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
2 Hb_000926_020 0.0711259481 - - -
3 Hb_188279_010 0.077670653 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
4 Hb_000721_010 0.0847585735 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011571_010 0.0968602735 - - Metal tolerance protein C4, putative [Ricinus communis]
6 Hb_000000_080 0.1039879021 - - lipoate-protein ligase B, putative [Ricinus communis]
7 Hb_003683_160 0.1048424316 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
8 Hb_007317_210 0.105590672 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
9 Hb_112798_030 0.1056478335 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012627_050 0.1094575645 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
11 Hb_000008_470 0.1132864857 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
12 Hb_007951_060 0.113845332 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_003862_050 0.1141006004 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
14 Hb_006065_020 0.1142539436 - - -
15 Hb_004324_070 0.1155755139 - - protein phosphatase 2C [Hevea brasiliensis]
16 Hb_000123_120 0.1163656543 - - actin depolymerizing factor 4 [Hevea brasiliensis]
17 Hb_001439_150 0.1198579116 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
18 Hb_001450_050 0.1207489763 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000062_350 0.1233061838 - - amino acid transporter, putative [Ricinus communis]
20 Hb_003069_010 0.1245797024 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001847_020 Hb_001847_020 Hb_000926_020 Hb_000926_020 Hb_001847_020--Hb_000926_020 Hb_188279_010 Hb_188279_010 Hb_001847_020--Hb_188279_010 Hb_000721_010 Hb_000721_010 Hb_001847_020--Hb_000721_010 Hb_011571_010 Hb_011571_010 Hb_001847_020--Hb_011571_010 Hb_000000_080 Hb_000000_080 Hb_001847_020--Hb_000000_080 Hb_003683_160 Hb_003683_160 Hb_001847_020--Hb_003683_160 Hb_000926_020--Hb_000721_010 Hb_000008_470 Hb_000008_470 Hb_000926_020--Hb_000008_470 Hb_000123_120 Hb_000123_120 Hb_000926_020--Hb_000123_120 Hb_000926_020--Hb_188279_010 Hb_003862_050 Hb_003862_050 Hb_000926_020--Hb_003862_050 Hb_000173_230 Hb_000173_230 Hb_188279_010--Hb_000173_230 Hb_188279_010--Hb_003683_160 Hb_007317_210 Hb_007317_210 Hb_188279_010--Hb_007317_210 Hb_188279_010--Hb_011571_010 Hb_009048_040 Hb_009048_040 Hb_188279_010--Hb_009048_040 Hb_006065_020 Hb_006065_020 Hb_000721_010--Hb_006065_020 Hb_185467_010 Hb_185467_010 Hb_000721_010--Hb_185467_010 Hb_000046_300 Hb_000046_300 Hb_000721_010--Hb_000046_300 Hb_000721_010--Hb_000000_080 Hb_011571_010--Hb_007317_210 Hb_112798_030 Hb_112798_030 Hb_011571_010--Hb_112798_030 Hb_000107_620 Hb_000107_620 Hb_011571_010--Hb_000107_620 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_001811_050 Hb_001811_050 Hb_011571_010--Hb_001811_050 Hb_006541_030 Hb_006541_030 Hb_011571_010--Hb_006541_030 Hb_000000_080--Hb_006065_020 Hb_001439_150 Hb_001439_150 Hb_000000_080--Hb_001439_150 Hb_168707_030 Hb_168707_030 Hb_000000_080--Hb_168707_030 Hb_000030_010 Hb_000030_010 Hb_000000_080--Hb_000030_010 Hb_000017_120 Hb_000017_120 Hb_000000_080--Hb_000017_120 Hb_007951_060 Hb_007951_060 Hb_000000_080--Hb_007951_060 Hb_004324_070 Hb_004324_070 Hb_003683_160--Hb_004324_070 Hb_181288_020 Hb_181288_020 Hb_003683_160--Hb_181288_020 Hb_000069_110 Hb_000069_110 Hb_003683_160--Hb_000069_110 Hb_000080_190 Hb_000080_190 Hb_003683_160--Hb_000080_190 Hb_003683_160--Hb_011571_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.29665 1.24219 3.32654 1.28835 3.58451 4.47948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69339 4.65059 6.47275 2.19164 1.6805

CAGE analysis