Hb_020805_080

Information

Type -
Description -
Location Contig20805: 61922-64933
Sequence    

Annotation

kegg
ID rcu:RCOM_1601730
description hypothetical protein
nr
ID XP_012073609.1
description PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08055 PE=4 SV=1
Gene Ontology
ID GO:0005739
description localized to the inner membrane of the chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21522: 61957-64987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_080 0.0 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
2 Hb_004041_020 0.0947370083 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
3 Hb_001604_060 0.1091937218 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
4 Hb_002540_080 0.1128883809 - - cysteine-type peptidase, putative [Ricinus communis]
5 Hb_002946_190 0.113060584 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
6 Hb_000163_100 0.1139193429 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
7 Hb_018133_020 0.1155200544 - - transporter, putative [Ricinus communis]
8 Hb_000160_180 0.1184053965 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
9 Hb_002374_570 0.118884486 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
10 Hb_000012_250 0.1197194536 - - hypothetical protein L484_019524 [Morus notabilis]
11 Hb_026889_030 0.1200430967 - - protein with unknown function [Ricinus communis]
12 Hb_000193_110 0.121114032 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
13 Hb_146673_010 0.1214934753 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
14 Hb_000676_390 0.1218037048 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
15 Hb_131181_010 0.1225161858 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
16 Hb_003728_060 0.1227535297 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
17 Hb_000000_210 0.1229202363 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
18 Hb_000429_040 0.1230852826 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
19 Hb_001318_260 0.1235422948 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
20 Hb_000413_240 0.123793112 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_020805_080 Hb_020805_080 Hb_004041_020 Hb_004041_020 Hb_020805_080--Hb_004041_020 Hb_001604_060 Hb_001604_060 Hb_020805_080--Hb_001604_060 Hb_002540_080 Hb_002540_080 Hb_020805_080--Hb_002540_080 Hb_002946_190 Hb_002946_190 Hb_020805_080--Hb_002946_190 Hb_000163_100 Hb_000163_100 Hb_020805_080--Hb_000163_100 Hb_018133_020 Hb_018133_020 Hb_020805_080--Hb_018133_020 Hb_004041_020--Hb_002946_190 Hb_000413_240 Hb_000413_240 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_000429_040 Hb_000429_040 Hb_004041_020--Hb_000429_040 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_004041_020--Hb_012565_070 Hb_001268_420 Hb_001268_420 Hb_001604_060--Hb_001268_420 Hb_000329_200 Hb_000329_200 Hb_001604_060--Hb_000329_200 Hb_017225_020 Hb_017225_020 Hb_001604_060--Hb_017225_020 Hb_004195_270 Hb_004195_270 Hb_001604_060--Hb_004195_270 Hb_118419_010 Hb_118419_010 Hb_001604_060--Hb_118419_010 Hb_028872_080 Hb_028872_080 Hb_001604_060--Hb_028872_080 Hb_003622_030 Hb_003622_030 Hb_002540_080--Hb_003622_030 Hb_000676_390 Hb_000676_390 Hb_002540_080--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_002540_080--Hb_026889_030 Hb_012799_170 Hb_012799_170 Hb_002540_080--Hb_012799_170 Hb_000160_180 Hb_000160_180 Hb_002540_080--Hb_000160_180 Hb_001318_260 Hb_001318_260 Hb_002540_080--Hb_001318_260 Hb_000690_190 Hb_000690_190 Hb_002946_190--Hb_000690_190 Hb_002946_190--Hb_001863_380 Hb_146673_010 Hb_146673_010 Hb_002946_190--Hb_146673_010 Hb_002946_190--Hb_000413_240 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100 Hb_000163_100--Hb_000413_240 Hb_000413_060 Hb_000413_060 Hb_000163_100--Hb_000413_060 Hb_000163_100--Hb_001863_380 Hb_000163_100--Hb_002946_190 Hb_000012_250 Hb_000012_250 Hb_000163_100--Hb_000012_250 Hb_000163_100--Hb_000429_040 Hb_131181_010 Hb_131181_010 Hb_018133_020--Hb_131181_010 Hb_026053_020 Hb_026053_020 Hb_018133_020--Hb_026053_020 Hb_001279_080 Hb_001279_080 Hb_018133_020--Hb_001279_080 Hb_018133_020--Hb_001318_260 Hb_012114_070 Hb_012114_070 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.391 16.91 135.081 49.6253 36.4727 36.5215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.2783 131.399 78.7966 34.8165 52.7379

CAGE analysis