Hb_006787_050

Information

Type -
Description -
Location Contig6787: 44004-47016
Sequence    

Annotation

kegg
ID cic:CICLE_v10019486mg
description hypothetical protein
nr
ID KDP25005.1
description hypothetical protein JCGZ_23988 [Jatropha curcas]
swissprot
ID Q9CAT6
description Organic cation/carnitine transporter 1 OS=Arabidopsis thaliana GN=OCT1 PE=2 SV=1
trembl
ID A0A067JYB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23988 PE=4 SV=1
Gene Ontology
ID GO:0016021
description organic cation carnitine transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006787_050 0.0 - - hypothetical protein JCGZ_23988 [Jatropha curcas]
2 Hb_000684_240 0.1713381238 - - hypothetical protein RCOM_0819620 [Ricinus communis]
3 Hb_000208_120 0.196065319 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
4 Hb_000421_180 0.2030529579 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000926_020 0.2063526245 - - -
6 Hb_000708_040 0.2086804044 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001322_050 0.2139986519 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
8 Hb_001847_020 0.2158507024 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
9 Hb_188279_010 0.2168218684 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
10 Hb_009491_040 0.220546759 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
11 Hb_000326_040 0.2219508305 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
12 Hb_000062_350 0.2260951817 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000062_150 0.2295916273 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
14 Hb_001439_190 0.2311091791 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
15 Hb_000029_310 0.2326063167 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
16 Hb_005211_160 0.2330620364 - - Protein PNS1, putative [Ricinus communis]
17 Hb_003018_140 0.2336945312 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
18 Hb_001221_170 0.234749825 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
19 Hb_002284_310 0.2352853994 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
20 Hb_085226_010 0.2356578941 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]

Gene co-expression network

sample Hb_006787_050 Hb_006787_050 Hb_000684_240 Hb_000684_240 Hb_006787_050--Hb_000684_240 Hb_000208_120 Hb_000208_120 Hb_006787_050--Hb_000208_120 Hb_000421_180 Hb_000421_180 Hb_006787_050--Hb_000421_180 Hb_000926_020 Hb_000926_020 Hb_006787_050--Hb_000926_020 Hb_000708_040 Hb_000708_040 Hb_006787_050--Hb_000708_040 Hb_001322_050 Hb_001322_050 Hb_006787_050--Hb_001322_050 Hb_000326_040 Hb_000326_040 Hb_000684_240--Hb_000326_040 Hb_000684_240--Hb_000926_020 Hb_005211_160 Hb_005211_160 Hb_000684_240--Hb_005211_160 Hb_002681_030 Hb_002681_030 Hb_000684_240--Hb_002681_030 Hb_000684_240--Hb_000421_180 Hb_185447_010 Hb_185447_010 Hb_000208_120--Hb_185447_010 Hb_000505_010 Hb_000505_010 Hb_000208_120--Hb_000505_010 Hb_001898_160 Hb_001898_160 Hb_000208_120--Hb_001898_160 Hb_002284_310 Hb_002284_310 Hb_000208_120--Hb_002284_310 Hb_000270_260 Hb_000270_260 Hb_000208_120--Hb_000270_260 Hb_000735_130 Hb_000735_130 Hb_000208_120--Hb_000735_130 Hb_001960_040 Hb_001960_040 Hb_000421_180--Hb_001960_040 Hb_001357_140 Hb_001357_140 Hb_000421_180--Hb_001357_140 Hb_114893_020 Hb_114893_020 Hb_000421_180--Hb_114893_020 Hb_001357_180 Hb_001357_180 Hb_000421_180--Hb_001357_180 Hb_002188_130 Hb_002188_130 Hb_000421_180--Hb_002188_130 Hb_000317_490 Hb_000317_490 Hb_000421_180--Hb_000317_490 Hb_001847_020 Hb_001847_020 Hb_000926_020--Hb_001847_020 Hb_000721_010 Hb_000721_010 Hb_000926_020--Hb_000721_010 Hb_000008_470 Hb_000008_470 Hb_000926_020--Hb_000008_470 Hb_000123_120 Hb_000123_120 Hb_000926_020--Hb_000123_120 Hb_188279_010 Hb_188279_010 Hb_000926_020--Hb_188279_010 Hb_003862_050 Hb_003862_050 Hb_000926_020--Hb_003862_050 Hb_000032_440 Hb_000032_440 Hb_000708_040--Hb_000032_440 Hb_000708_040--Hb_002284_310 Hb_000708_040--Hb_000317_490 Hb_003688_050 Hb_003688_050 Hb_000708_040--Hb_003688_050 Hb_002234_060 Hb_002234_060 Hb_000708_040--Hb_002234_060 Hb_000331_460 Hb_000331_460 Hb_000708_040--Hb_000331_460 Hb_001439_190 Hb_001439_190 Hb_001322_050--Hb_001439_190 Hb_001609_030 Hb_001609_030 Hb_001322_050--Hb_001609_030 Hb_010172_050 Hb_010172_050 Hb_001322_050--Hb_010172_050 Hb_000189_140 Hb_000189_140 Hb_001322_050--Hb_000189_140 Hb_005532_060 Hb_005532_060 Hb_001322_050--Hb_005532_060 Hb_003401_050 Hb_003401_050 Hb_001322_050--Hb_003401_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.700157 0.0549864 0.280891 0.0722081 0.0715401 0.250771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.196034 0.220333 0.78924 0.04392 0.231343

CAGE analysis