Hb_001439_190

Information

Type -
Description -
Location Contig1439: 176562-178061
Sequence    

Annotation

kegg
ID rcu:RCOM_0537770
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084737.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q9LXF2
description Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
trembl
ID B9SVI6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0537770 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g74630-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_190 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_001141_280 0.1171810837 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
3 Hb_010172_050 0.1241574718 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
4 Hb_031862_110 0.1258905141 - - calcium-dependent protein kinase [Hevea brasiliensis]
5 Hb_005532_060 0.1277273451 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
6 Hb_001322_050 0.1310130376 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
7 Hb_003401_050 0.1317749568 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
8 Hb_006117_070 0.1319630112 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
9 Hb_009666_040 0.1327288705 - - glutathione transferase, putative [Ricinus communis]
10 Hb_002235_280 0.1333415846 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
11 Hb_168319_030 0.1361185872 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_006711_060 0.1362379456 - - Tubulin beta-1 chain [Morus notabilis]
13 Hb_001923_010 0.1365944951 - - PREDICTED: outer envelope protein 80, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_002397_070 0.1388971939 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
15 Hb_019263_020 0.1391083104 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
16 Hb_000162_040 0.1392514594 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
17 Hb_021409_030 0.1392820123 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
18 Hb_002769_050 0.1393627412 - - PREDICTED: endophilin-A1 [Jatropha curcas]
19 Hb_000377_060 0.1403754017 - - ARF GTPase activator, putative [Ricinus communis]
20 Hb_000431_010 0.1404574737 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_001439_190 Hb_001439_190 Hb_001141_280 Hb_001141_280 Hb_001439_190--Hb_001141_280 Hb_010172_050 Hb_010172_050 Hb_001439_190--Hb_010172_050 Hb_031862_110 Hb_031862_110 Hb_001439_190--Hb_031862_110 Hb_005532_060 Hb_005532_060 Hb_001439_190--Hb_005532_060 Hb_001322_050 Hb_001322_050 Hb_001439_190--Hb_001322_050 Hb_003401_050 Hb_003401_050 Hb_001439_190--Hb_003401_050 Hb_009666_040 Hb_009666_040 Hb_001141_280--Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_001141_280--Hb_001829_060 Hb_003018_190 Hb_003018_190 Hb_001141_280--Hb_003018_190 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_000239_010 Hb_000239_010 Hb_001141_280--Hb_000239_010 Hb_001109_020 Hb_001109_020 Hb_001141_280--Hb_001109_020 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140 Hb_000431_010 Hb_000431_010 Hb_031862_110--Hb_000431_010 Hb_000240_090 Hb_000240_090 Hb_031862_110--Hb_000240_090 Hb_001014_040 Hb_001014_040 Hb_031862_110--Hb_001014_040 Hb_006711_060 Hb_006711_060 Hb_031862_110--Hb_006711_060 Hb_000617_150 Hb_000617_150 Hb_031862_110--Hb_000617_150 Hb_002056_060 Hb_002056_060 Hb_031862_110--Hb_002056_060 Hb_000457_150 Hb_000457_150 Hb_005532_060--Hb_000457_150 Hb_005532_060--Hb_178968_110 Hb_055062_030 Hb_055062_030 Hb_005532_060--Hb_055062_030 Hb_005532_060--Hb_003266_130 Hb_000223_150 Hb_000223_150 Hb_005532_060--Hb_000223_150 Hb_005488_010 Hb_005488_010 Hb_005532_060--Hb_005488_010 Hb_001609_030 Hb_001609_030 Hb_001322_050--Hb_001609_030 Hb_001322_050--Hb_010172_050 Hb_000189_140 Hb_000189_140 Hb_001322_050--Hb_000189_140 Hb_001322_050--Hb_005532_060 Hb_001322_050--Hb_003401_050 Hb_005883_060 Hb_005883_060 Hb_003401_050--Hb_005883_060 Hb_000161_070 Hb_000161_070 Hb_003401_050--Hb_000161_070 Hb_000635_250 Hb_000635_250 Hb_003401_050--Hb_000635_250 Hb_002044_080 Hb_002044_080 Hb_003401_050--Hb_002044_080 Hb_005895_030 Hb_005895_030 Hb_003401_050--Hb_005895_030 Hb_000608_250 Hb_000608_250 Hb_003401_050--Hb_000608_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653186 0.209 0.464009 0.15605 0.289613 0.861988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.62458 1.15473 1.52327 0.294205 0.411193

CAGE analysis