Hb_000608_250

Information

Type -
Description -
Location Contig608: 106699-110621
Sequence    

Annotation

kegg
ID tcc:TCM_025184
description Cytidine/deoxycytidylate deaminase family protein isoform 1
nr
ID XP_007029309.1
description Cytidine/deoxycytidylate deaminase family protein isoform 2 [Theobroma cacao]
swissprot
ID K7WIZ6
description Riboflavin biosynthesis protein PYRR, chloroplastic OS=Zea mays GN=PYRR PE=1 SV=1
trembl
ID A0A061EYD9
description Cytidine/deoxycytidylate deaminase family protein isoform 2 OS=Theobroma cacao GN=TCM_025184 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cytidine deoxycytidylate deaminase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50841: 106940-107044 , PASA_asmbl_50842: 108111-108382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_250 0.0 - - Cytidine/deoxycytidylate deaminase family protein isoform 2 [Theobroma cacao]
2 Hb_001675_180 0.0918488305 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
3 Hb_004841_010 0.0940899366 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
4 Hb_011139_030 0.097096433 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
5 Hb_000342_130 0.102423537 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
6 Hb_000428_050 0.1030905659 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
7 Hb_000170_210 0.1066223033 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000796_220 0.1073360584 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
9 Hb_001776_140 0.1073780148 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_002095_010 0.1088025899 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
11 Hb_002374_240 0.1089442266 - - nucellin, putative [Ricinus communis]
12 Hb_000201_110 0.1099828375 - - hypothetical protein JCGZ_21690 [Jatropha curcas]
13 Hb_003728_080 0.1102013529 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
14 Hb_005895_030 0.1109082902 - - PREDICTED: uncharacterized protein LOC105643388 [Jatropha curcas]
15 Hb_000331_260 0.1121192283 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
16 Hb_004143_060 0.1125947957 - - DNA binding protein, putative [Ricinus communis]
17 Hb_000856_110 0.1126248331 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
18 Hb_004369_020 0.1137165484 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
19 Hb_005489_110 0.1148695198 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
20 Hb_016172_020 0.115372156 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000608_250 Hb_000608_250 Hb_001675_180 Hb_001675_180 Hb_000608_250--Hb_001675_180 Hb_004841_010 Hb_004841_010 Hb_000608_250--Hb_004841_010 Hb_011139_030 Hb_011139_030 Hb_000608_250--Hb_011139_030 Hb_000342_130 Hb_000342_130 Hb_000608_250--Hb_000342_130 Hb_000428_050 Hb_000428_050 Hb_000608_250--Hb_000428_050 Hb_000170_210 Hb_000170_210 Hb_000608_250--Hb_000170_210 Hb_044728_010 Hb_044728_010 Hb_001675_180--Hb_044728_010 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_000010_330 Hb_000010_330 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250 Hb_165928_020 Hb_165928_020 Hb_004841_010--Hb_165928_020 Hb_023386_020 Hb_023386_020 Hb_004841_010--Hb_023386_020 Hb_004841_010--Hb_008643_210 Hb_016172_020 Hb_016172_020 Hb_004841_010--Hb_016172_020 Hb_000856_110 Hb_000856_110 Hb_004841_010--Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_004841_010--Hb_004100_080 Hb_000618_030 Hb_000618_030 Hb_011139_030--Hb_000618_030 Hb_000820_170 Hb_000820_170 Hb_011139_030--Hb_000820_170 Hb_000025_110 Hb_000025_110 Hb_011139_030--Hb_000025_110 Hb_048937_040 Hb_048937_040 Hb_011139_030--Hb_048937_040 Hb_011139_030--Hb_001675_180 Hb_006064_010 Hb_006064_010 Hb_011139_030--Hb_006064_010 Hb_000120_790 Hb_000120_790 Hb_000342_130--Hb_000120_790 Hb_000342_130--Hb_004841_010 Hb_000173_290 Hb_000173_290 Hb_000342_130--Hb_000173_290 Hb_065500_060 Hb_065500_060 Hb_000342_130--Hb_065500_060 Hb_000883_020 Hb_000883_020 Hb_000342_130--Hb_000883_020 Hb_000331_260 Hb_000331_260 Hb_000342_130--Hb_000331_260 Hb_000428_050--Hb_001776_140 Hb_012022_160 Hb_012022_160 Hb_000428_050--Hb_012022_160 Hb_000428_050--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_000428_050--Hb_007904_200 Hb_003195_070 Hb_003195_070 Hb_000428_050--Hb_003195_070 Hb_000428_050--Hb_001675_180 Hb_003175_010 Hb_003175_010 Hb_000170_210--Hb_003175_010 Hb_000796_220 Hb_000796_220 Hb_000170_210--Hb_000796_220 Hb_002044_080 Hb_002044_080 Hb_000170_210--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_000170_210--Hb_000808_230 Hb_000395_170 Hb_000395_170 Hb_000170_210--Hb_000395_170 Hb_000926_280 Hb_000926_280 Hb_000170_210--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24941 0.766243 1.35468 1.08617 1.96359 3.11341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997893 2.03519 2.28029 1.15144 1.93349

CAGE analysis