Hb_000428_050

Information

Type rubber biosynthesis
Description Gene Name: Dimethyallyltransferase
Location Contig428: 79505-89109
Sequence    

Annotation

kegg
ID rcu:RCOM_1520400
description ATP binding protein, putative (EC:2.5.1.8)
nr
ID XP_012078558.1
description PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
swissprot
ID Q9C5J6
description tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1
trembl
ID A0A067KBU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14706 PE=3 SV=1
Gene Ontology
ID GO:0008033
description trna dimethylallyltransferase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42074: 78716-79032 , PASA_asmbl_42075: 88884-89096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000428_050 0.0 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
2 Hb_001776_140 0.0565100471 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_012022_160 0.070149393 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
4 Hb_000010_330 0.072191485 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
5 Hb_007904_200 0.0751432603 - - protein binding protein, putative [Ricinus communis]
6 Hb_003195_070 0.0755363777 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_001675_180 0.0768668117 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
8 Hb_002701_020 0.0798265329 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
9 Hb_002506_020 0.0819589263 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
10 Hb_010457_030 0.0819748814 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
11 Hb_048937_040 0.0831161025 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000243_030 0.086493693 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
13 Hb_000120_790 0.0873143245 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
14 Hb_004841_010 0.0874690367 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
15 Hb_002835_080 0.0881897089 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
16 Hb_011139_030 0.0921562117 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
17 Hb_002200_080 0.0922538126 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
18 Hb_000395_170 0.0923522177 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
19 Hb_000025_140 0.0923672621 - - las1-like family protein [Populus trichocarpa]
20 Hb_000815_210 0.0934097566 - - uncoupling protein 3, partial [Manihot esculenta]

Gene co-expression network

sample Hb_000428_050 Hb_000428_050 Hb_001776_140 Hb_001776_140 Hb_000428_050--Hb_001776_140 Hb_012022_160 Hb_012022_160 Hb_000428_050--Hb_012022_160 Hb_000010_330 Hb_000010_330 Hb_000428_050--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_000428_050--Hb_007904_200 Hb_003195_070 Hb_003195_070 Hb_000428_050--Hb_003195_070 Hb_001675_180 Hb_001675_180 Hb_000428_050--Hb_001675_180 Hb_000120_790 Hb_000120_790 Hb_001776_140--Hb_000120_790 Hb_001776_140--Hb_001675_180 Hb_001545_120 Hb_001545_120 Hb_001776_140--Hb_001545_120 Hb_044728_010 Hb_044728_010 Hb_001776_140--Hb_044728_010 Hb_000243_030 Hb_000243_030 Hb_001776_140--Hb_000243_030 Hb_004310_150 Hb_004310_150 Hb_012022_160--Hb_004310_150 Hb_003010_030 Hb_003010_030 Hb_012022_160--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_012022_160--Hb_000093_160 Hb_006185_050 Hb_006185_050 Hb_012022_160--Hb_006185_050 Hb_001195_760 Hb_001195_760 Hb_012022_160--Hb_001195_760 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_007904_200--Hb_010457_030 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_003195_070--Hb_000010_330 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_003195_070--Hb_002200_080 Hb_001675_180--Hb_044728_010 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_001675_180--Hb_000010_330 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91781 1.11337 1.08475 1.59195 2.69447 3.4691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51662 2.74664 2.33291 0.879796 1.46454

CAGE analysis