Hb_005895_030

Information

Type -
Description -
Location Contig5895: 35443-38095
Sequence    

Annotation

kegg
ID pmum:103336700
description uncharacterized LOC103336700
nr
ID XP_012083883.1
description PREDICTED: uncharacterized protein LOC105643388 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M5WBZ6
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011789mg PE=4 SV=1
Gene Ontology
ID GO:0009062
description profilin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50137: 38417-38638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005895_030 0.0 - - PREDICTED: uncharacterized protein LOC105643388 [Jatropha curcas]
2 Hb_002687_130 0.1009044936 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
3 Hb_000608_250 0.1109082902 - - Cytidine/deoxycytidylate deaminase family protein isoform 2 [Theobroma cacao]
4 Hb_000170_210 0.1244072611 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_003401_050 0.1246718373 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
6 Hb_163950_030 0.124924066 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
7 Hb_000690_130 0.1258622327 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
8 Hb_000227_080 0.12639492 - - conserved hypothetical protein [Ricinus communis]
9 Hb_108350_010 0.1267813286 - - GTP-binding protein erg, putative [Ricinus communis]
10 Hb_003226_140 0.1273219367 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
11 Hb_065500_060 0.1283814082 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
12 Hb_000342_130 0.1308077029 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
13 Hb_007017_090 0.1317394412 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]
14 Hb_000395_170 0.1326768835 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
15 Hb_001662_150 0.1352181129 - - Scaffold attachment factor B1 [Medicago truncatula]
16 Hb_003175_010 0.1357829506 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
17 Hb_000160_060 0.1361829173 - - unknown [Populus trichocarpa]
18 Hb_005883_060 0.136866239 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 isoform X1 [Jatropha curcas]
19 Hb_009557_070 0.1369236887 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009694_010 0.1373229566 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005895_030 Hb_005895_030 Hb_002687_130 Hb_002687_130 Hb_005895_030--Hb_002687_130 Hb_000608_250 Hb_000608_250 Hb_005895_030--Hb_000608_250 Hb_000170_210 Hb_000170_210 Hb_005895_030--Hb_000170_210 Hb_003401_050 Hb_003401_050 Hb_005895_030--Hb_003401_050 Hb_163950_030 Hb_163950_030 Hb_005895_030--Hb_163950_030 Hb_000690_130 Hb_000690_130 Hb_005895_030--Hb_000690_130 Hb_002687_130--Hb_000690_130 Hb_028227_020 Hb_028227_020 Hb_002687_130--Hb_028227_020 Hb_006120_070 Hb_006120_070 Hb_002687_130--Hb_006120_070 Hb_009694_010 Hb_009694_010 Hb_002687_130--Hb_009694_010 Hb_029921_040 Hb_029921_040 Hb_002687_130--Hb_029921_040 Hb_006064_010 Hb_006064_010 Hb_002687_130--Hb_006064_010 Hb_001675_180 Hb_001675_180 Hb_000608_250--Hb_001675_180 Hb_004841_010 Hb_004841_010 Hb_000608_250--Hb_004841_010 Hb_011139_030 Hb_011139_030 Hb_000608_250--Hb_011139_030 Hb_000342_130 Hb_000342_130 Hb_000608_250--Hb_000342_130 Hb_000428_050 Hb_000428_050 Hb_000608_250--Hb_000428_050 Hb_000608_250--Hb_000170_210 Hb_003175_010 Hb_003175_010 Hb_000170_210--Hb_003175_010 Hb_000796_220 Hb_000796_220 Hb_000170_210--Hb_000796_220 Hb_002044_080 Hb_002044_080 Hb_000170_210--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_000170_210--Hb_000808_230 Hb_000395_170 Hb_000395_170 Hb_000170_210--Hb_000395_170 Hb_000926_280 Hb_000926_280 Hb_000170_210--Hb_000926_280 Hb_005883_060 Hb_005883_060 Hb_003401_050--Hb_005883_060 Hb_000161_070 Hb_000161_070 Hb_003401_050--Hb_000161_070 Hb_000635_250 Hb_000635_250 Hb_003401_050--Hb_000635_250 Hb_003401_050--Hb_002044_080 Hb_003401_050--Hb_000608_250 Hb_004837_030 Hb_004837_030 Hb_163950_030--Hb_004837_030 Hb_163950_030--Hb_009694_010 Hb_163950_030--Hb_004841_010 Hb_000494_040 Hb_000494_040 Hb_163950_030--Hb_000494_040 Hb_002184_150 Hb_002184_150 Hb_163950_030--Hb_002184_150 Hb_000606_090 Hb_000606_090 Hb_163950_030--Hb_000606_090 Hb_000690_130--Hb_006064_010 Hb_000373_240 Hb_000373_240 Hb_000690_130--Hb_000373_240 Hb_002391_300 Hb_002391_300 Hb_000690_130--Hb_002391_300 Hb_004182_040 Hb_004182_040 Hb_000690_130--Hb_004182_040 Hb_002805_270 Hb_002805_270 Hb_000690_130--Hb_002805_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71656 0.707556 2.85253 1.34345 2.45661 5.38745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.26672 3.8295 2.77009 2.38576 2.04131

CAGE analysis