Hb_002687_130

Information

Type -
Description -
Location Contig2687: 162434-166496
Sequence    

Annotation

kegg
ID tcc:TCM_007647
description Uncharacterized protein isoform 1
nr
ID XP_012068556.1
description PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24462 PE=4 SV=1
Gene Ontology
ID GO:0009535
description ribosomal rna small subunit methyltransferase j

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28074: 162495-166494 , PASA_asmbl_28075: 167093-174331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002687_130 0.0 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
2 Hb_000690_130 0.0703898513 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
3 Hb_028227_020 0.0775284267 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
4 Hb_006120_070 0.0831496738 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
5 Hb_009694_010 0.0836811794 - - conserved hypothetical protein [Ricinus communis]
6 Hb_029921_040 0.0880867636 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006064_010 0.0893486747 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
8 Hb_007163_070 0.0904682966 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
9 Hb_005697_060 0.0914614995 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
10 Hb_004837_030 0.0915696126 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
11 Hb_004116_060 0.091687605 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
12 Hb_163950_030 0.093584985 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
13 Hb_002918_030 0.0941117331 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
14 Hb_007632_030 0.0947456641 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
15 Hb_002391_300 0.0950852484 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
16 Hb_000373_240 0.0957758685 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
17 Hb_002154_120 0.0964267572 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
18 Hb_003125_160 0.0979772824 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
19 Hb_000920_180 0.0980213772 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
20 Hb_000465_090 0.0989367905 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]

Gene co-expression network

sample Hb_002687_130 Hb_002687_130 Hb_000690_130 Hb_000690_130 Hb_002687_130--Hb_000690_130 Hb_028227_020 Hb_028227_020 Hb_002687_130--Hb_028227_020 Hb_006120_070 Hb_006120_070 Hb_002687_130--Hb_006120_070 Hb_009694_010 Hb_009694_010 Hb_002687_130--Hb_009694_010 Hb_029921_040 Hb_029921_040 Hb_002687_130--Hb_029921_040 Hb_006064_010 Hb_006064_010 Hb_002687_130--Hb_006064_010 Hb_000690_130--Hb_006064_010 Hb_000373_240 Hb_000373_240 Hb_000690_130--Hb_000373_240 Hb_002391_300 Hb_002391_300 Hb_000690_130--Hb_002391_300 Hb_004182_040 Hb_004182_040 Hb_000690_130--Hb_004182_040 Hb_002805_270 Hb_002805_270 Hb_000690_130--Hb_002805_270 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_006120_070--Hb_005697_060 Hb_002918_030 Hb_002918_030 Hb_006120_070--Hb_002918_030 Hb_024847_010 Hb_024847_010 Hb_006120_070--Hb_024847_010 Hb_001512_060 Hb_001512_060 Hb_006120_070--Hb_001512_060 Hb_000959_210 Hb_000959_210 Hb_006120_070--Hb_000959_210 Hb_001329_290 Hb_001329_290 Hb_006120_070--Hb_001329_290 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_009694_010--Hb_005697_060 Hb_000189_340 Hb_000189_340 Hb_029921_040--Hb_000189_340 Hb_002495_040 Hb_002495_040 Hb_029921_040--Hb_002495_040 Hb_029921_040--Hb_000373_240 Hb_114343_010 Hb_114343_010 Hb_029921_040--Hb_114343_010 Hb_000272_020 Hb_000272_020 Hb_029921_040--Hb_000272_020 Hb_003728_080 Hb_003728_080 Hb_006064_010--Hb_003728_080 Hb_000879_200 Hb_000879_200 Hb_006064_010--Hb_000879_200 Hb_011139_030 Hb_011139_030 Hb_006064_010--Hb_011139_030 Hb_007026_030 Hb_007026_030 Hb_006064_010--Hb_007026_030 Hb_009646_030 Hb_009646_030 Hb_006064_010--Hb_009646_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4126 4.55345 13.2762 6.07836 15.4299 20.4988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8281 19.0768 8.22077 9.36536 9.31101

CAGE analysis