Hb_002805_270

Information

Type -
Description -
Location Contig2805: 223193-230555
Sequence    

Annotation

kegg
ID rcu:RCOM_1246130
description Phytochromobilin:ferredoxin oxidoreductase, chloroplast precursor, putative (EC:1.3.7.4)
nr
ID XP_012088628.1
description PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9SR43
description Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana GN=HY2 PE=2 SV=1
trembl
ID A0A067JV19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27129 PE=4 SV=1
Gene Ontology
ID GO:0050619
description heme oxygenase 2 protein partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29308: 223193-230474
cDNA
(Sanger)
(ID:Location)		 020_D03.ab1: 224668-230470 , 044_B15.ab1: 224892-230470

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_270 0.0 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_028227_020 0.0771743188 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
3 Hb_000690_130 0.0778611462 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
4 Hb_004182_040 0.0809495644 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
5 Hb_000058_100 0.0813772376 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
6 Hb_005697_060 0.0835429056 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
7 Hb_004414_060 0.0843936284 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
8 Hb_000342_130 0.0856187716 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
9 Hb_004837_190 0.0879827073 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
10 Hb_003125_160 0.0884032931 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
11 Hb_000046_280 0.0885114421 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
12 Hb_002043_190 0.0886397635 - - rwd domain-containing protein, putative [Ricinus communis]
13 Hb_006120_070 0.0890740012 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
14 Hb_000365_120 0.0893919084 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
15 Hb_009545_080 0.0897373485 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
16 Hb_000120_790 0.0900405961 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
17 Hb_001512_060 0.0918916229 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
18 Hb_001135_220 0.0919168988 - - FGFR1 oncogene partner, putative [Ricinus communis]
19 Hb_000236_240 0.0936966494 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
20 Hb_001199_020 0.0952603562 - - hypothetical protein JCGZ_25565 [Jatropha curcas]

Gene co-expression network

sample Hb_002805_270 Hb_002805_270 Hb_028227_020 Hb_028227_020 Hb_002805_270--Hb_028227_020 Hb_000690_130 Hb_000690_130 Hb_002805_270--Hb_000690_130 Hb_004182_040 Hb_004182_040 Hb_002805_270--Hb_004182_040 Hb_000058_100 Hb_000058_100 Hb_002805_270--Hb_000058_100 Hb_005697_060 Hb_005697_060 Hb_002805_270--Hb_005697_060 Hb_004414_060 Hb_004414_060 Hb_002805_270--Hb_004414_060 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_006064_010 Hb_006064_010 Hb_000690_130--Hb_006064_010 Hb_002687_130 Hb_002687_130 Hb_000690_130--Hb_002687_130 Hb_000373_240 Hb_000373_240 Hb_000690_130--Hb_000373_240 Hb_002391_300 Hb_002391_300 Hb_000690_130--Hb_002391_300 Hb_000690_130--Hb_004182_040 Hb_003125_160 Hb_003125_160 Hb_004182_040--Hb_003125_160 Hb_003665_060 Hb_003665_060 Hb_004182_040--Hb_003665_060 Hb_003728_080 Hb_003728_080 Hb_004182_040--Hb_003728_080 Hb_001350_010 Hb_001350_010 Hb_004182_040--Hb_001350_010 Hb_000291_220 Hb_000291_220 Hb_004182_040--Hb_000291_220 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_000076_120 Hb_000076_120 Hb_000058_100--Hb_000076_120 Hb_027472_150 Hb_027472_150 Hb_000058_100--Hb_027472_150 Hb_004055_030 Hb_004055_030 Hb_000058_100--Hb_004055_030 Hb_004310_130 Hb_004310_130 Hb_000058_100--Hb_004310_130 Hb_007163_070 Hb_007163_070 Hb_005697_060--Hb_007163_070 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_000465_090 Hb_000465_090 Hb_005697_060--Hb_000465_090 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120 Hb_001632_040 Hb_001632_040 Hb_004414_060--Hb_001632_040 Hb_002835_040 Hb_002835_040 Hb_004414_060--Hb_002835_040 Hb_003964_070 Hb_003964_070 Hb_004414_060--Hb_003964_070 Hb_003163_020 Hb_003163_020 Hb_004414_060--Hb_003163_020 Hb_001493_030 Hb_001493_030 Hb_004414_060--Hb_001493_030 Hb_007317_110 Hb_007317_110 Hb_004414_060--Hb_007317_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.43541 1.74794 3.96027 2.73359 8.09804 5.22518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.98611 5.98857 4.28056 4.2865 3.51692

CAGE analysis