Hb_001322_050

Information

Type -
Description -
Location Contig1322: 68708-70608
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_329829
description hypothetical protein
nr
ID XP_012070073.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
swissprot
ID Q9M4P3
description Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
trembl
ID A0A067KUV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03463 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09261: 68751-69335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
2 Hb_001439_190 0.1310130376 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_001609_030 0.1550538302 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
4 Hb_010172_050 0.1614809411 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
5 Hb_000189_140 0.1630536961 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_005532_060 0.1662041357 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
7 Hb_003401_050 0.1705044 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
8 Hb_002397_070 0.1709483501 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
9 Hb_003266_130 0.171588188 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
10 Hb_001274_030 0.1719315605 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
11 Hb_178968_110 0.1744302948 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
12 Hb_000505_010 0.1752043315 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
13 Hb_000048_050 0.1759993446 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
14 Hb_025214_130 0.1761478323 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
15 Hb_009491_040 0.1764627574 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
16 Hb_002046_190 0.1787925764 - - calcium-binding family protein [Populus trichocarpa]
17 Hb_006949_040 0.1798352647 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_034585_060 0.1800892963 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
19 Hb_006117_070 0.1802474157 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
20 Hb_002769_050 0.1805942 - - PREDICTED: endophilin-A1 [Jatropha curcas]

Gene co-expression network

sample Hb_001322_050 Hb_001322_050 Hb_001439_190 Hb_001439_190 Hb_001322_050--Hb_001439_190 Hb_001609_030 Hb_001609_030 Hb_001322_050--Hb_001609_030 Hb_010172_050 Hb_010172_050 Hb_001322_050--Hb_010172_050 Hb_000189_140 Hb_000189_140 Hb_001322_050--Hb_000189_140 Hb_005532_060 Hb_005532_060 Hb_001322_050--Hb_005532_060 Hb_003401_050 Hb_003401_050 Hb_001322_050--Hb_003401_050 Hb_001141_280 Hb_001141_280 Hb_001439_190--Hb_001141_280 Hb_001439_190--Hb_010172_050 Hb_031862_110 Hb_031862_110 Hb_001439_190--Hb_031862_110 Hb_001439_190--Hb_005532_060 Hb_001439_190--Hb_003401_050 Hb_001823_100 Hb_001823_100 Hb_001609_030--Hb_001823_100 Hb_011794_070 Hb_011794_070 Hb_001609_030--Hb_011794_070 Hb_000200_210 Hb_000200_210 Hb_001609_030--Hb_000200_210 Hb_012340_030 Hb_012340_030 Hb_001609_030--Hb_012340_030 Hb_000975_290 Hb_000975_290 Hb_001609_030--Hb_000975_290 Hb_000329_040 Hb_000329_040 Hb_001609_030--Hb_000329_040 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140 Hb_001373_180 Hb_001373_180 Hb_000189_140--Hb_001373_180 Hb_013607_040 Hb_013607_040 Hb_000189_140--Hb_013607_040 Hb_011242_040 Hb_011242_040 Hb_000189_140--Hb_011242_040 Hb_001140_220 Hb_001140_220 Hb_000189_140--Hb_001140_220 Hb_000317_280 Hb_000317_280 Hb_000189_140--Hb_000317_280 Hb_007747_200 Hb_007747_200 Hb_000189_140--Hb_007747_200 Hb_000457_150 Hb_000457_150 Hb_005532_060--Hb_000457_150 Hb_005532_060--Hb_178968_110 Hb_055062_030 Hb_055062_030 Hb_005532_060--Hb_055062_030 Hb_005532_060--Hb_003266_130 Hb_000223_150 Hb_000223_150 Hb_005532_060--Hb_000223_150 Hb_005488_010 Hb_005488_010 Hb_005532_060--Hb_005488_010 Hb_005883_060 Hb_005883_060 Hb_003401_050--Hb_005883_060 Hb_000161_070 Hb_000161_070 Hb_003401_050--Hb_000161_070 Hb_000635_250 Hb_000635_250 Hb_003401_050--Hb_000635_250 Hb_002044_080 Hb_002044_080 Hb_003401_050--Hb_002044_080 Hb_005895_030 Hb_005895_030 Hb_003401_050--Hb_005895_030 Hb_000608_250 Hb_000608_250 Hb_003401_050--Hb_000608_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.795009 0.194688 0.216322 0.111848 0.0857564 0.840413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.561303 0.772334 0.995175 0.134115 0.331232

CAGE analysis