Hb_114893_020

Information

Type -
Description -
Location Contig114893: 22230-27887
Sequence    

Annotation

kegg
ID rcu:RCOM_1678490
description ankyrin repeat-containing protein, putative
nr
ID XP_002509549.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID O70511
description Ankyrin-3 OS=Rattus norvegicus GN=Ank3 PE=1 SV=3
trembl
ID B9RBL5
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1678490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114893_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_000096_090 0.130567032 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
3 Hb_000733_070 0.1367426125 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
4 Hb_001360_040 0.1380417868 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
5 Hb_001357_140 0.1432816871 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000421_180 0.1435550404 - - ATP binding protein, putative [Ricinus communis]
7 Hb_003732_020 0.1458827668 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
8 Hb_001960_040 0.1525245497 - - PREDICTED: CTP synthase [Jatropha curcas]
9 Hb_001396_180 0.1544642594 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
10 Hb_000264_240 0.1567593957 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000990_080 0.1607841516 - - gulonolactone oxidase, putative [Ricinus communis]
12 Hb_003016_020 0.1636776458 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
13 Hb_000630_070 0.1646771342 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
14 Hb_000761_020 0.1651904064 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
15 Hb_001671_080 0.1653510843 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_000025_200 0.1671695032 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
17 Hb_000317_030 0.1675952534 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
18 Hb_003376_040 0.1679552772 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
19 Hb_000034_140 0.1681634909 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
20 Hb_011316_100 0.1683117635 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]

Gene co-expression network

sample Hb_114893_020 Hb_114893_020 Hb_000096_090 Hb_000096_090 Hb_114893_020--Hb_000096_090 Hb_000733_070 Hb_000733_070 Hb_114893_020--Hb_000733_070 Hb_001360_040 Hb_001360_040 Hb_114893_020--Hb_001360_040 Hb_001357_140 Hb_001357_140 Hb_114893_020--Hb_001357_140 Hb_000421_180 Hb_000421_180 Hb_114893_020--Hb_000421_180 Hb_003732_020 Hb_003732_020 Hb_114893_020--Hb_003732_020 Hb_003376_040 Hb_003376_040 Hb_000096_090--Hb_003376_040 Hb_001396_180 Hb_001396_180 Hb_000096_090--Hb_001396_180 Hb_000648_110 Hb_000648_110 Hb_000096_090--Hb_000648_110 Hb_001053_180 Hb_001053_180 Hb_000096_090--Hb_001053_180 Hb_000316_050 Hb_000316_050 Hb_000096_090--Hb_000316_050 Hb_000096_090--Hb_003732_020 Hb_000127_010 Hb_000127_010 Hb_000733_070--Hb_000127_010 Hb_000264_240 Hb_000264_240 Hb_000733_070--Hb_000264_240 Hb_000733_070--Hb_003732_020 Hb_000041_080 Hb_000041_080 Hb_000733_070--Hb_000041_080 Hb_000733_070--Hb_001360_040 Hb_000733_070--Hb_000096_090 Hb_001360_040--Hb_001396_180 Hb_001360_040--Hb_003732_020 Hb_000761_020 Hb_000761_020 Hb_001360_040--Hb_000761_020 Hb_001360_040--Hb_003376_040 Hb_002685_140 Hb_002685_140 Hb_001360_040--Hb_002685_140 Hb_000436_070 Hb_000436_070 Hb_001360_040--Hb_000436_070 Hb_001357_140--Hb_000421_180 Hb_001357_180 Hb_001357_180 Hb_001357_140--Hb_001357_180 Hb_003787_020 Hb_003787_020 Hb_001357_140--Hb_003787_020 Hb_001960_040 Hb_001960_040 Hb_001357_140--Hb_001960_040 Hb_001357_140--Hb_003376_040 Hb_001671_080 Hb_001671_080 Hb_001357_140--Hb_001671_080 Hb_000421_180--Hb_001960_040 Hb_000421_180--Hb_001357_180 Hb_002188_130 Hb_002188_130 Hb_000421_180--Hb_002188_130 Hb_000317_490 Hb_000317_490 Hb_000421_180--Hb_000317_490 Hb_003732_020--Hb_000264_240 Hb_000175_440 Hb_000175_440 Hb_003732_020--Hb_000175_440 Hb_003732_020--Hb_002685_140 Hb_000787_050 Hb_000787_050 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6936 1.31911 6.53803 3.78375 6.93586 8.203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7108 3.68044 12.4131 1.71623 1.5137

CAGE analysis