Hb_000733_070

Information

Type -
Description -
Location Contig733: 62478-65699
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20330g
description POPTRDRAFT_659599; hypothetical protein
nr
ID XP_012088303.1
description PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
swissprot
ID F4K295
description Rop guanine nucleotide exchange factor 5 OS=Arabidopsis thaliana GN=ROPGEF5 PE=2 SV=1
trembl
ID A0A067L8Y1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01357 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rop guanine nucleotide exchange factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56149: 62463-65758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_070 0.0 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
2 Hb_000127_010 0.1202581917 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
3 Hb_000264_240 0.1204324664 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003732_020 0.1225902797 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
5 Hb_000041_080 0.1258707863 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
6 Hb_001360_040 0.1272580916 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
7 Hb_000096_090 0.1304800201 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
8 Hb_002188_130 0.1317978827 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
9 Hb_114893_020 0.1367426125 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_000072_070 0.1414418418 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
11 Hb_001396_180 0.141522153 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
12 Hb_003607_150 0.1455713263 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
13 Hb_001960_040 0.145624695 - - PREDICTED: CTP synthase [Jatropha curcas]
14 Hb_000418_180 0.1459210391 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000175_440 0.1470520623 - - signal peptidase family protein [Populus trichocarpa]
16 Hb_000676_220 0.147490937 - - ADP-ribosylation factor, putative [Ricinus communis]
17 Hb_000412_110 0.147859211 - - Rop4 [Hevea brasiliensis]
18 Hb_000787_050 0.1488130135 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
19 Hb_002835_240 0.1495597791 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
20 Hb_004994_170 0.1499064821 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]

Gene co-expression network

sample Hb_000733_070 Hb_000733_070 Hb_000127_010 Hb_000127_010 Hb_000733_070--Hb_000127_010 Hb_000264_240 Hb_000264_240 Hb_000733_070--Hb_000264_240 Hb_003732_020 Hb_003732_020 Hb_000733_070--Hb_003732_020 Hb_000041_080 Hb_000041_080 Hb_000733_070--Hb_000041_080 Hb_001360_040 Hb_001360_040 Hb_000733_070--Hb_001360_040 Hb_000096_090 Hb_000096_090 Hb_000733_070--Hb_000096_090 Hb_024682_010 Hb_024682_010 Hb_000127_010--Hb_024682_010 Hb_000887_020 Hb_000887_020 Hb_000127_010--Hb_000887_020 Hb_008175_040 Hb_008175_040 Hb_000127_010--Hb_008175_040 Hb_000251_070 Hb_000251_070 Hb_000127_010--Hb_000251_070 Hb_000454_050 Hb_000454_050 Hb_000127_010--Hb_000454_050 Hb_001053_180 Hb_001053_180 Hb_000127_010--Hb_001053_180 Hb_000264_240--Hb_003732_020 Hb_002685_140 Hb_002685_140 Hb_000264_240--Hb_002685_140 Hb_000025_200 Hb_000025_200 Hb_000264_240--Hb_000025_200 Hb_000264_240--Hb_001360_040 Hb_000175_440 Hb_000175_440 Hb_000264_240--Hb_000175_440 Hb_001396_180 Hb_001396_180 Hb_000264_240--Hb_001396_180 Hb_003732_020--Hb_000175_440 Hb_003732_020--Hb_001360_040 Hb_003732_020--Hb_002685_140 Hb_000787_050 Hb_000787_050 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050 Hb_000412_110 Hb_000412_110 Hb_000041_080--Hb_000412_110 Hb_000023_230 Hb_000023_230 Hb_000041_080--Hb_000023_230 Hb_002529_100 Hb_002529_100 Hb_000041_080--Hb_002529_100 Hb_003540_040 Hb_003540_040 Hb_000041_080--Hb_003540_040 Hb_002681_020 Hb_002681_020 Hb_000041_080--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_000041_080--Hb_000676_220 Hb_001360_040--Hb_001396_180 Hb_000761_020 Hb_000761_020 Hb_001360_040--Hb_000761_020 Hb_003376_040 Hb_003376_040 Hb_001360_040--Hb_003376_040 Hb_001360_040--Hb_002685_140 Hb_000436_070 Hb_000436_070 Hb_001360_040--Hb_000436_070 Hb_000096_090--Hb_003376_040 Hb_000096_090--Hb_001396_180 Hb_000648_110 Hb_000648_110 Hb_000096_090--Hb_000648_110 Hb_000096_090--Hb_001053_180 Hb_000316_050 Hb_000316_050 Hb_000096_090--Hb_000316_050 Hb_000096_090--Hb_003732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5567 1.9632 13.5939 6.47888 18.9485 8.52997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2728 14.6562 19.0329 3.61599 4.61134

CAGE analysis