Hb_002259_200

Information

Type -
Description -
Location Contig2259: 142449-143942
Sequence    

Annotation

kegg
ID rcu:RCOM_0612600
description hypothetical protein
nr
ID XP_002525656.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SI37
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0612600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23479: 143407-143939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004545_020 0.2079185459 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
3 Hb_021495_010 0.2129614361 - - conserved hypothetical protein [Ricinus communis]
4 Hb_025214_120 0.2257654122 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
5 Hb_010998_050 0.2299424211 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
6 Hb_010812_070 0.2373975731 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
7 Hb_001252_240 0.2394563463 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
8 Hb_001507_080 0.2412102177 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
9 Hb_001195_640 0.2430827724 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
10 Hb_036790_030 0.2457149467 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
11 Hb_002837_050 0.2463762639 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
12 Hb_169116_010 0.2499328686 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
13 Hb_030627_070 0.2548700901 - - histone H4 [Zea mays]
14 Hb_000321_080 0.257016167 - - histone H4 [Zea mays]
15 Hb_000261_330 0.2593030558 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
16 Hb_003050_110 0.2617297354 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
17 Hb_000684_120 0.2635619273 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
18 Hb_004324_390 0.2641597444 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
19 Hb_003750_070 0.264944523 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
20 Hb_008994_010 0.2651047203 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002259_200 Hb_002259_200 Hb_004545_020 Hb_004545_020 Hb_002259_200--Hb_004545_020 Hb_021495_010 Hb_021495_010 Hb_002259_200--Hb_021495_010 Hb_025214_120 Hb_025214_120 Hb_002259_200--Hb_025214_120 Hb_010998_050 Hb_010998_050 Hb_002259_200--Hb_010998_050 Hb_010812_070 Hb_010812_070 Hb_002259_200--Hb_010812_070 Hb_001252_240 Hb_001252_240 Hb_002259_200--Hb_001252_240 Hb_001300_210 Hb_001300_210 Hb_004545_020--Hb_001300_210 Hb_003750_070 Hb_003750_070 Hb_004545_020--Hb_003750_070 Hb_004545_020--Hb_001252_240 Hb_001016_010 Hb_001016_010 Hb_004545_020--Hb_001016_010 Hb_008062_040 Hb_008062_040 Hb_004545_020--Hb_008062_040 Hb_000640_050 Hb_000640_050 Hb_021495_010--Hb_000640_050 Hb_005901_030 Hb_005901_030 Hb_021495_010--Hb_005901_030 Hb_001195_640 Hb_001195_640 Hb_021495_010--Hb_001195_640 Hb_021495_010--Hb_010812_070 Hb_000211_100 Hb_000211_100 Hb_021495_010--Hb_000211_100 Hb_003050_260 Hb_003050_260 Hb_021495_010--Hb_003050_260 Hb_000260_650 Hb_000260_650 Hb_025214_120--Hb_000260_650 Hb_001510_040 Hb_001510_040 Hb_025214_120--Hb_001510_040 Hb_005271_140 Hb_005271_140 Hb_025214_120--Hb_005271_140 Hb_002411_060 Hb_002411_060 Hb_025214_120--Hb_002411_060 Hb_004162_230 Hb_004162_230 Hb_025214_120--Hb_004162_230 Hb_000684_120 Hb_000684_120 Hb_025214_120--Hb_000684_120 Hb_036790_030 Hb_036790_030 Hb_010998_050--Hb_036790_030 Hb_000345_410 Hb_000345_410 Hb_010998_050--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_010998_050--Hb_002007_280 Hb_000349_230 Hb_000349_230 Hb_010998_050--Hb_000349_230 Hb_000345_130 Hb_000345_130 Hb_010998_050--Hb_000345_130 Hb_005162_130 Hb_005162_130 Hb_010998_050--Hb_005162_130 Hb_010812_070--Hb_003050_260 Hb_010812_070--Hb_001195_640 Hb_003001_090 Hb_003001_090 Hb_010812_070--Hb_003001_090 Hb_000987_040 Hb_000987_040 Hb_010812_070--Hb_000987_040 Hb_000331_140 Hb_000331_140 Hb_010812_070--Hb_000331_140 Hb_000369_010 Hb_000369_010 Hb_010812_070--Hb_000369_010 Hb_023765_020 Hb_023765_020 Hb_001252_240--Hb_023765_020 Hb_000905_120 Hb_000905_120 Hb_001252_240--Hb_000905_120 Hb_007811_040 Hb_007811_040 Hb_001252_240--Hb_007811_040 Hb_010577_030 Hb_010577_030 Hb_001252_240--Hb_010577_030 Hb_001252_240--Hb_000369_010 Hb_010080_010 Hb_010080_010 Hb_001252_240--Hb_010080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.291074 0 0.705762 0.242065 0.112892 0.0131057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.238361 0.107153 0.0501785 0.0749301 0.0558587

CAGE analysis