Hb_001016_010

Information

Type -
Description -
Location Contig1016: 32062-36191
Sequence    

Annotation

kegg
ID rcu:RCOM_0572620
description hypothetical protein
nr
ID XP_002529643.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD20
description Protein POLLENLESS 3-LIKE 2 OS=Arabidopsis thaliana GN=At3g51280 PE=2 SV=1
trembl
ID B9SUH4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0572620 PE=4 SV=1
Gene Ontology
ID GO:0006259
description protein pollenless 3-like 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00749: 32070-33082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004162_230 0.2078143983 - - PREDICTED: histone H2B [Jatropha curcas]
3 Hb_000544_030 0.2120861359 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002411_060 0.2132260675 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
5 Hb_025214_120 0.2162017469 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
6 Hb_010998_050 0.2236584246 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
7 Hb_030627_070 0.2253404789 - - histone H4 [Zea mays]
8 Hb_001252_240 0.2263129473 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
9 Hb_004545_020 0.2280836642 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
10 Hb_004221_030 0.2395068526 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
11 Hb_000005_110 0.2406970381 - - histone H2B1 [Hevea brasiliensis]
12 Hb_004324_390 0.2422207526 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
13 Hb_002307_020 0.2438123781 - - PREDICTED: histone H1-like [Jatropha curcas]
14 Hb_160256_010 0.2448309717 - - -
15 Hb_000321_080 0.2450705575 - - histone H4 [Zea mays]
16 Hb_000684_120 0.248163022 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
17 Hb_000442_040 0.2486166615 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
18 Hb_000261_330 0.2487770056 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
19 Hb_001454_070 0.2494172213 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
20 Hb_000948_200 0.2518970716 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_001016_010 Hb_001016_010 Hb_004162_230 Hb_004162_230 Hb_001016_010--Hb_004162_230 Hb_000544_030 Hb_000544_030 Hb_001016_010--Hb_000544_030 Hb_002411_060 Hb_002411_060 Hb_001016_010--Hb_002411_060 Hb_025214_120 Hb_025214_120 Hb_001016_010--Hb_025214_120 Hb_010998_050 Hb_010998_050 Hb_001016_010--Hb_010998_050 Hb_030627_070 Hb_030627_070 Hb_001016_010--Hb_030627_070 Hb_004162_230--Hb_002411_060 Hb_157022_030 Hb_157022_030 Hb_004162_230--Hb_157022_030 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_000739_270 Hb_000739_270 Hb_004162_230--Hb_000739_270 Hb_004162_230--Hb_010998_050 Hb_000948_200 Hb_000948_200 Hb_000544_030--Hb_000948_200 Hb_003669_010 Hb_003669_010 Hb_000544_030--Hb_003669_010 Hb_002960_150 Hb_002960_150 Hb_000544_030--Hb_002960_150 Hb_004093_020 Hb_004093_020 Hb_000544_030--Hb_004093_020 Hb_008566_040 Hb_008566_040 Hb_000544_030--Hb_008566_040 Hb_010488_040 Hb_010488_040 Hb_000544_030--Hb_010488_040 Hb_000684_120 Hb_000684_120 Hb_002411_060--Hb_000684_120 Hb_004449_040 Hb_004449_040 Hb_002411_060--Hb_004449_040 Hb_000345_260 Hb_000345_260 Hb_002411_060--Hb_000345_260 Hb_002837_050 Hb_002837_050 Hb_002411_060--Hb_002837_050 Hb_004117_190 Hb_004117_190 Hb_002411_060--Hb_004117_190 Hb_000260_650 Hb_000260_650 Hb_025214_120--Hb_000260_650 Hb_001510_040 Hb_001510_040 Hb_025214_120--Hb_001510_040 Hb_005271_140 Hb_005271_140 Hb_025214_120--Hb_005271_140 Hb_025214_120--Hb_002411_060 Hb_025214_120--Hb_004162_230 Hb_025214_120--Hb_000684_120 Hb_010998_050--Hb_036790_030 Hb_000345_410 Hb_000345_410 Hb_010998_050--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_010998_050--Hb_002007_280 Hb_000349_230 Hb_000349_230 Hb_010998_050--Hb_000349_230 Hb_000345_130 Hb_000345_130 Hb_010998_050--Hb_000345_130 Hb_005162_130 Hb_005162_130 Hb_010998_050--Hb_005162_130 Hb_003399_100 Hb_003399_100 Hb_030627_070--Hb_003399_100 Hb_030627_070--Hb_000684_120 Hb_002045_190 Hb_002045_190 Hb_030627_070--Hb_002045_190 Hb_000005_110 Hb_000005_110 Hb_030627_070--Hb_000005_110 Hb_006275_060 Hb_006275_060 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10024 0.0839545 5.85609 2.46192 0.0785575 1.61713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82425 0.497876 0.546742 0.515547 0.365068

CAGE analysis