Hb_003050_110

Information

Type -
Description -
Location Contig3050: 117631-121966
Sequence    

Annotation

kegg
ID pop:POPTR_0004s13700g
description POPTRDRAFT_714512; prefoldin family protein
nr
ID XP_011003668.1
description PREDICTED: prefoldin subunit 6 [Populus euphratica]
swissprot
ID Q17Q89
description Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1
trembl
ID A0A067KPA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04610 PE=4 SV=1
Gene Ontology
ID GO:0009987
description prefoldin subunit 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32127: 117510-119923 , PASA_asmbl_32128: 97882-119923 , PASA_asmbl_32130: 117842-118033 , PASA_asmbl_32131: 118072-118303 , PASA_asmbl_32132: 118823-121911 , PASA_asmbl_32133: 117515-119130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_110 0.0 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
2 Hb_001377_030 0.1136193638 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
3 Hb_001269_640 0.125301818 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
4 Hb_001476_070 0.1454041566 - - MinE protein [Manihot esculenta]
5 Hb_004934_030 0.145787971 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
6 Hb_000331_250 0.1477360435 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
7 Hb_001114_160 0.1493679915 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
8 Hb_000926_180 0.1506065315 - - proline synthetase associated protein, putative [Ricinus communis]
9 Hb_000000_360 0.1514624264 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
10 Hb_007313_090 0.1550553584 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002876_350 0.1585823153 - - PREDICTED: gibberellin-regulated protein 9-like isoform X2 [Citrus sinensis]
12 Hb_010315_060 0.1606569489 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_114336_030 0.1640129939 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
14 Hb_029510_020 0.1641243416 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
15 Hb_001097_100 0.1654866922 - - Chaperone DnaJ-domain superfamily protein [Theobroma cacao]
16 Hb_158144_010 0.1663488353 - - -
17 Hb_022132_010 0.1663992603 - - unknown [Medicago truncatula]
18 Hb_121937_010 0.1693310938 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
19 Hb_000189_310 0.1720793626 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
20 Hb_002450_040 0.1737345587 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]

Gene co-expression network

sample Hb_003050_110 Hb_003050_110 Hb_001377_030 Hb_001377_030 Hb_003050_110--Hb_001377_030 Hb_001269_640 Hb_001269_640 Hb_003050_110--Hb_001269_640 Hb_001476_070 Hb_001476_070 Hb_003050_110--Hb_001476_070 Hb_004934_030 Hb_004934_030 Hb_003050_110--Hb_004934_030 Hb_000331_250 Hb_000331_250 Hb_003050_110--Hb_000331_250 Hb_001114_160 Hb_001114_160 Hb_003050_110--Hb_001114_160 Hb_002450_040 Hb_002450_040 Hb_001377_030--Hb_002450_040 Hb_000000_360 Hb_000000_360 Hb_001377_030--Hb_000000_360 Hb_140833_010 Hb_140833_010 Hb_001377_030--Hb_140833_010 Hb_001377_030--Hb_004934_030 Hb_000260_800 Hb_000260_800 Hb_001377_030--Hb_000260_800 Hb_000926_180 Hb_000926_180 Hb_001269_640--Hb_000926_180 Hb_010315_060 Hb_010315_060 Hb_001269_640--Hb_010315_060 Hb_001269_640--Hb_000331_250 Hb_000422_030 Hb_000422_030 Hb_001269_640--Hb_000422_030 Hb_027043_020 Hb_027043_020 Hb_001269_640--Hb_027043_020 Hb_001195_260 Hb_001195_260 Hb_001269_640--Hb_001195_260 Hb_002477_300 Hb_002477_300 Hb_001476_070--Hb_002477_300 Hb_001476_070--Hb_004934_030 Hb_001998_120 Hb_001998_120 Hb_001476_070--Hb_001998_120 Hb_004449_170 Hb_004449_170 Hb_001476_070--Hb_004449_170 Hb_146673_010 Hb_146673_010 Hb_001476_070--Hb_146673_010 Hb_006360_030 Hb_006360_030 Hb_001476_070--Hb_006360_030 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_004934_030--Hb_000331_250 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_004934_030--Hb_001998_120 Hb_005773_060 Hb_005773_060 Hb_000331_250--Hb_005773_060 Hb_000331_250--Hb_000000_360 Hb_003544_020 Hb_003544_020 Hb_000331_250--Hb_003544_020 Hb_121937_010 Hb_121937_010 Hb_000331_250--Hb_121937_010 Hb_002972_010 Hb_002972_010 Hb_001114_160--Hb_002972_010 Hb_114336_030 Hb_114336_030 Hb_001114_160--Hb_114336_030 Hb_001097_100 Hb_001097_100 Hb_001114_160--Hb_001097_100 Hb_029510_020 Hb_029510_020 Hb_001114_160--Hb_029510_020 Hb_003848_040 Hb_003848_040 Hb_001114_160--Hb_003848_040 Hb_003556_030 Hb_003556_030 Hb_001114_160--Hb_003556_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25854 0.38117 5.12423 1.98067 2.17291 1.69201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4108 3.33484 0.665769 0.558468 0.884346

CAGE analysis