Hb_029510_020

Information

Type -
Description -
Location Contig29510: 974-6307
Sequence    

Annotation

kegg
ID rcu:RCOM_1493520
description Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative
nr
ID KDP37250.1
description hypothetical protein JCGZ_06306 [Jatropha curcas]
swissprot
ID Q9M812
description Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana GN=CURT1C PE=1 SV=1
trembl
ID A0A067KYD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06306 PE=4 SV=1
Gene Ontology
ID GO:0044237
description protein curvature thylakoid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30858: 2587-6245 , PASA_asmbl_30859: 2750-6295
cDNA
(Sanger)
(ID:Location)		 040_E17.ab1: 2599-6171

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_020 0.0 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
2 Hb_003185_110 0.0940476922 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
3 Hb_002783_270 0.1165097956 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
4 Hb_005773_060 0.119121217 - - defender against cell death, putative [Ricinus communis]
5 Hb_004934_030 0.1225831074 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
6 Hb_001476_070 0.1253223906 - - MinE protein [Manihot esculenta]
7 Hb_002900_160 0.1286850424 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
8 Hb_000562_030 0.1286892673 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003544_020 0.1293421266 - - PREDICTED: elongin-A [Jatropha curcas]
10 Hb_001114_160 0.1298053161 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
11 Hb_000236_390 0.1301257626 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
12 Hb_002811_260 0.1301504047 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
13 Hb_006360_030 0.1313365634 - - -
14 Hb_000331_250 0.1335912793 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
15 Hb_003849_130 0.1339731015 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
16 Hb_000261_160 0.1350705852 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
17 Hb_001221_320 0.1353265459 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
18 Hb_004041_020 0.1362436439 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
19 Hb_003057_090 0.1370809741 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
20 Hb_000144_080 0.1372379823 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]

Gene co-expression network

sample Hb_029510_020 Hb_029510_020 Hb_003185_110 Hb_003185_110 Hb_029510_020--Hb_003185_110 Hb_002783_270 Hb_002783_270 Hb_029510_020--Hb_002783_270 Hb_005773_060 Hb_005773_060 Hb_029510_020--Hb_005773_060 Hb_004934_030 Hb_004934_030 Hb_029510_020--Hb_004934_030 Hb_001476_070 Hb_001476_070 Hb_029510_020--Hb_001476_070 Hb_002900_160 Hb_002900_160 Hb_029510_020--Hb_002900_160 Hb_003018_010 Hb_003018_010 Hb_003185_110--Hb_003018_010 Hb_003053_010 Hb_003053_010 Hb_003185_110--Hb_003053_010 Hb_000260_550 Hb_000260_550 Hb_003185_110--Hb_000260_550 Hb_007044_130 Hb_007044_130 Hb_003185_110--Hb_007044_130 Hb_126861_010 Hb_126861_010 Hb_003185_110--Hb_126861_010 Hb_000236_390 Hb_000236_390 Hb_003185_110--Hb_000236_390 Hb_002783_270--Hb_007044_130 Hb_000046_560 Hb_000046_560 Hb_002783_270--Hb_000046_560 Hb_006925_040 Hb_006925_040 Hb_002783_270--Hb_006925_040 Hb_003894_070 Hb_003894_070 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_002811_260 Hb_002811_260 Hb_005773_060--Hb_002811_260 Hb_003544_020 Hb_003544_020 Hb_005773_060--Hb_003544_020 Hb_000562_030 Hb_000562_030 Hb_005773_060--Hb_000562_030 Hb_002192_010 Hb_002192_010 Hb_005773_060--Hb_002192_010 Hb_000186_190 Hb_000186_190 Hb_005773_060--Hb_000186_190 Hb_124953_020 Hb_124953_020 Hb_005773_060--Hb_124953_020 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000331_250 Hb_000331_250 Hb_004934_030--Hb_000331_250 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_001998_120 Hb_001998_120 Hb_004934_030--Hb_001998_120 Hb_002477_300 Hb_002477_300 Hb_001476_070--Hb_002477_300 Hb_001476_070--Hb_004934_030 Hb_001476_070--Hb_001998_120 Hb_004449_170 Hb_004449_170 Hb_001476_070--Hb_004449_170 Hb_146673_010 Hb_146673_010 Hb_001476_070--Hb_146673_010 Hb_006360_030 Hb_006360_030 Hb_001476_070--Hb_006360_030 Hb_000000_170 Hb_000000_170 Hb_002900_160--Hb_000000_170 Hb_002900_160--Hb_002783_270 Hb_003018_020 Hb_003018_020 Hb_002900_160--Hb_003018_020 Hb_004052_020 Hb_004052_020 Hb_002900_160--Hb_004052_020 Hb_000699_160 Hb_000699_160 Hb_002900_160--Hb_000699_160 Hb_002900_160--Hb_007044_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6024 5.00416 33.5885 22.9465 19.7882 10.7032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4724 45.7438 10.5682 6.88917 8.16292

CAGE analysis