Hb_009976_010

Information

Type -
Description -
Location Contig9976: 248-6855
Sequence    

Annotation

kegg
ID rcu:RCOM_1524270
description hypothetical protein
nr
ID XP_012067357.1
description PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26878 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64899: 5477-6222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009976_010 0.0 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
2 Hb_000743_030 0.1918679091 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
3 Hb_001799_110 0.1946999972 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
4 Hb_001862_120 0.2037499178 - - PREDICTED: aspartic proteinase-like protein 2 [Jatropha curcas]
5 Hb_009557_030 0.2064318961 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]
6 Hb_002631_300 0.2186370575 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
7 Hb_002092_120 0.2218450119 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
8 Hb_006570_150 0.2224610057 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
9 Hb_075265_010 0.2231075036 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_004102_030 0.2241386068 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
11 Hb_001196_040 0.226371399 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
12 Hb_158144_010 0.2264170171 - - -
13 Hb_018279_020 0.2264703251 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
14 Hb_006907_100 0.2270179068 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
15 Hb_003362_080 0.2270248822 - - beta-galactosidase, putative [Ricinus communis]
16 Hb_001832_150 0.2301977535 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
17 Hb_000162_220 0.2333856845 - - nodulin family protein [Populus trichocarpa]
18 Hb_000568_060 0.2338104736 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
19 Hb_000696_160 0.2339296982 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
20 Hb_001623_100 0.2339853031 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009976_010 Hb_009976_010 Hb_000743_030 Hb_000743_030 Hb_009976_010--Hb_000743_030 Hb_001799_110 Hb_001799_110 Hb_009976_010--Hb_001799_110 Hb_001862_120 Hb_001862_120 Hb_009976_010--Hb_001862_120 Hb_009557_030 Hb_009557_030 Hb_009976_010--Hb_009557_030 Hb_002631_300 Hb_002631_300 Hb_009976_010--Hb_002631_300 Hb_002092_120 Hb_002092_120 Hb_009976_010--Hb_002092_120 Hb_001911_040 Hb_001911_040 Hb_000743_030--Hb_001911_040 Hb_006570_150 Hb_006570_150 Hb_000743_030--Hb_006570_150 Hb_001221_220 Hb_001221_220 Hb_000743_030--Hb_001221_220 Hb_000538_240 Hb_000538_240 Hb_000743_030--Hb_000538_240 Hb_002631_280 Hb_002631_280 Hb_000743_030--Hb_002631_280 Hb_000422_030 Hb_000422_030 Hb_000743_030--Hb_000422_030 Hb_003362_080 Hb_003362_080 Hb_001799_110--Hb_003362_080 Hb_000959_310 Hb_000959_310 Hb_001799_110--Hb_000959_310 Hb_075265_010 Hb_075265_010 Hb_001799_110--Hb_075265_010 Hb_001449_010 Hb_001449_010 Hb_001799_110--Hb_001449_010 Hb_158144_010 Hb_158144_010 Hb_001799_110--Hb_158144_010 Hb_001386_110 Hb_001386_110 Hb_001862_120--Hb_001386_110 Hb_000676_140 Hb_000676_140 Hb_001862_120--Hb_000676_140 Hb_001221_560 Hb_001221_560 Hb_001862_120--Hb_001221_560 Hb_000627_260 Hb_000627_260 Hb_001862_120--Hb_000627_260 Hb_001623_100 Hb_001623_100 Hb_001862_120--Hb_001623_100 Hb_018279_020 Hb_018279_020 Hb_001862_120--Hb_018279_020 Hb_001191_080 Hb_001191_080 Hb_009557_030--Hb_001191_080 Hb_003147_060 Hb_003147_060 Hb_009557_030--Hb_003147_060 Hb_000120_810 Hb_000120_810 Hb_009557_030--Hb_000120_810 Hb_000256_090 Hb_000256_090 Hb_009557_030--Hb_000256_090 Hb_009557_030--Hb_000538_240 Hb_009557_030--Hb_002092_120 Hb_003178_020 Hb_003178_020 Hb_002631_300--Hb_003178_020 Hb_001767_060 Hb_001767_060 Hb_002631_300--Hb_001767_060 Hb_000189_540 Hb_000189_540 Hb_002631_300--Hb_000189_540 Hb_101146_010 Hb_101146_010 Hb_002631_300--Hb_101146_010 Hb_003673_040 Hb_003673_040 Hb_002631_300--Hb_003673_040 Hb_000152_210 Hb_000152_210 Hb_002631_300--Hb_000152_210 Hb_008225_090 Hb_008225_090 Hb_002092_120--Hb_008225_090 Hb_000300_260 Hb_000300_260 Hb_002092_120--Hb_000300_260 Hb_000176_020 Hb_000176_020 Hb_002092_120--Hb_000176_020 Hb_002893_040 Hb_002893_040 Hb_002092_120--Hb_002893_040 Hb_002572_020 Hb_002572_020 Hb_002092_120--Hb_002572_020 Hb_000270_470 Hb_000270_470 Hb_002092_120--Hb_000270_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.785171 1.03924 1.12743 1.50339 0.141855 0.240075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60057 1.47716 0.0455183 0.106307 0.557558

CAGE analysis