Hb_001221_560

Information

Type -
Description -
Location Contig1221: 369109-371503
Sequence    

Annotation

kegg
ID cic:CICLE_v10031927mg
description hypothetical protein
nr
ID XP_012090653.1
description PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
swissprot
ID Q9LUE4
description 11-beta-hydroxysteroid dehydrogenase-like 6 OS=Arabidopsis thaliana GN=HSD6 PE=2 SV=1
trembl
ID A0A067JFH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26418 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06771: 367654-368142 , PASA_asmbl_06772: 366942-368801 , PASA_asmbl_06773: 366942-368801 , PASA_asmbl_06774: 370374-370896 , PASA_asmbl_06775: 371311-371598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_560 0.0 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
2 Hb_001862_120 0.1687068484 - - PREDICTED: aspartic proteinase-like protein 2 [Jatropha curcas]
3 Hb_000270_330 0.1706314285 - - ribosomal protein S6 kinase, putative [Ricinus communis]
4 Hb_006384_010 0.1764044028 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_012506_070 0.188971906 - - hypothetical protein POPTR_0004s20060g [Populus trichocarpa]
6 Hb_000676_140 0.1930609396 - - structural constituent of ribosome, putative [Ricinus communis]
7 Hb_116420_010 0.1932904024 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_011861_060 0.1941209066 - - -
9 Hb_001386_110 0.1967212145 - - PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
10 Hb_097218_020 0.199432354 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
11 Hb_035273_010 0.2006105834 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
12 Hb_000072_170 0.2006286934 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
13 Hb_004449_180 0.2061212104 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
14 Hb_001065_070 0.2066590135 - - -
15 Hb_000011_570 0.2088887408 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
16 Hb_001269_610 0.2112232619 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
17 Hb_000438_140 0.2125676039 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
18 Hb_040734_010 0.2131732892 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
19 Hb_000139_470 0.2136092638 - - Dual specificity protein phosphatase, putative [Ricinus communis]
20 Hb_002461_060 0.214415374 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_560 Hb_001221_560 Hb_001862_120 Hb_001862_120 Hb_001221_560--Hb_001862_120 Hb_000270_330 Hb_000270_330 Hb_001221_560--Hb_000270_330 Hb_006384_010 Hb_006384_010 Hb_001221_560--Hb_006384_010 Hb_012506_070 Hb_012506_070 Hb_001221_560--Hb_012506_070 Hb_000676_140 Hb_000676_140 Hb_001221_560--Hb_000676_140 Hb_116420_010 Hb_116420_010 Hb_001221_560--Hb_116420_010 Hb_001386_110 Hb_001386_110 Hb_001862_120--Hb_001386_110 Hb_001862_120--Hb_000676_140 Hb_000627_260 Hb_000627_260 Hb_001862_120--Hb_000627_260 Hb_001623_100 Hb_001623_100 Hb_001862_120--Hb_001623_100 Hb_018279_020 Hb_018279_020 Hb_001862_120--Hb_018279_020 Hb_111036_010 Hb_111036_010 Hb_000270_330--Hb_111036_010 Hb_000416_110 Hb_000416_110 Hb_000270_330--Hb_000416_110 Hb_057688_010 Hb_057688_010 Hb_000270_330--Hb_057688_010 Hb_011909_120 Hb_011909_120 Hb_000270_330--Hb_011909_120 Hb_000126_010 Hb_000126_010 Hb_000270_330--Hb_000126_010 Hb_011861_060 Hb_011861_060 Hb_000270_330--Hb_011861_060 Hb_006384_010--Hb_116420_010 Hb_004357_050 Hb_004357_050 Hb_006384_010--Hb_004357_050 Hb_004449_180 Hb_004449_180 Hb_006384_010--Hb_004449_180 Hb_000398_060 Hb_000398_060 Hb_006384_010--Hb_000398_060 Hb_002272_270 Hb_002272_270 Hb_006384_010--Hb_002272_270 Hb_005288_130 Hb_005288_130 Hb_006384_010--Hb_005288_130 Hb_000438_140 Hb_000438_140 Hb_012506_070--Hb_000438_140 Hb_000200_010 Hb_000200_010 Hb_012506_070--Hb_000200_010 Hb_001109_050 Hb_001109_050 Hb_012506_070--Hb_001109_050 Hb_113853_010 Hb_113853_010 Hb_012506_070--Hb_113853_010 Hb_134849_010 Hb_134849_010 Hb_012506_070--Hb_134849_010 Hb_001277_030 Hb_001277_030 Hb_012506_070--Hb_001277_030 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_000866_240 Hb_000866_240 Hb_000676_140--Hb_000866_240 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_001016_150 Hb_001016_150 Hb_000676_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_000676_140--Hb_001863_430 Hb_001159_150 Hb_001159_150 Hb_116420_010--Hb_001159_150 Hb_006816_270 Hb_006816_270 Hb_116420_010--Hb_006816_270 Hb_009680_020 Hb_009680_020 Hb_116420_010--Hb_009680_020 Hb_007943_200 Hb_007943_200 Hb_116420_010--Hb_007943_200 Hb_116420_010--Hb_000676_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0219911 0.054982 0.0668171 0.053604 0.0412245 0.0193697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100725 0.11883 0 0.0637085 0.0810616

CAGE analysis