Hb_000270_330

Information

Type -
Description -
Location Contig270: 246348-248760
Sequence    

Annotation

kegg
ID rcu:RCOM_1512890
description ribosomal protein S6 kinase, putative (EC:2.7.11.13)
nr
ID XP_002511480.1
description ribosomal protein S6 kinase, putative [Ricinus communis]
swissprot
ID Q39030
description Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2
trembl
ID B9R905
description Ribosomal protein S6 kinase, putative OS=Ricinus communis GN=RCOM_1512890 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase 2 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28189: 247304-247547 , PASA_asmbl_28190: 247702-248035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_330 0.0 - - ribosomal protein S6 kinase, putative [Ricinus communis]
2 Hb_111036_010 0.1228999209 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
3 Hb_000416_110 0.1239530497 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
4 Hb_057688_010 0.1263318734 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
5 Hb_011909_120 0.1264491695 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_000126_010 0.1288883326 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
7 Hb_011861_060 0.1320897493 - - -
8 Hb_002461_060 0.1331843768 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
9 Hb_003549_160 0.1351415863 - - Protein FAM18B, putative [Ricinus communis]
10 Hb_001123_030 0.1395240193 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_032202_120 0.140977795 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
12 Hb_004453_130 0.1417740622 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
13 Hb_000875_080 0.1423081119 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
14 Hb_003159_140 0.1433725983 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002217_510 0.1444495062 - - conserved hypothetical protein [Ricinus communis]
16 Hb_093666_010 0.1448836708 - - BnaC05g06620D [Brassica napus]
17 Hb_002338_020 0.1452001654 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
18 Hb_000075_040 0.1453598039 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
19 Hb_035273_010 0.1454659603 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
20 Hb_002447_120 0.1459010216 - - hypothetical protein O988_01801, partial [Pseudogymnoascus pannorum VKM F-3808]

Gene co-expression network

sample Hb_000270_330 Hb_000270_330 Hb_111036_010 Hb_111036_010 Hb_000270_330--Hb_111036_010 Hb_000416_110 Hb_000416_110 Hb_000270_330--Hb_000416_110 Hb_057688_010 Hb_057688_010 Hb_000270_330--Hb_057688_010 Hb_011909_120 Hb_011909_120 Hb_000270_330--Hb_011909_120 Hb_000126_010 Hb_000126_010 Hb_000270_330--Hb_000126_010 Hb_011861_060 Hb_011861_060 Hb_000270_330--Hb_011861_060 Hb_000270_470 Hb_000270_470 Hb_111036_010--Hb_000270_470 Hb_002439_010 Hb_002439_010 Hb_111036_010--Hb_002439_010 Hb_000875_080 Hb_000875_080 Hb_111036_010--Hb_000875_080 Hb_003942_020 Hb_003942_020 Hb_111036_010--Hb_003942_020 Hb_003678_020 Hb_003678_020 Hb_111036_010--Hb_003678_020 Hb_002271_010 Hb_002271_010 Hb_111036_010--Hb_002271_010 Hb_002445_100 Hb_002445_100 Hb_000416_110--Hb_002445_100 Hb_183433_010 Hb_183433_010 Hb_000416_110--Hb_183433_010 Hb_001153_210 Hb_001153_210 Hb_000416_110--Hb_001153_210 Hb_000005_220 Hb_000005_220 Hb_000416_110--Hb_000005_220 Hb_000789_320 Hb_000789_320 Hb_000416_110--Hb_000789_320 Hb_000866_310 Hb_000866_310 Hb_000416_110--Hb_000866_310 Hb_002205_030 Hb_002205_030 Hb_057688_010--Hb_002205_030 Hb_000710_040 Hb_000710_040 Hb_057688_010--Hb_000710_040 Hb_001089_030 Hb_001089_030 Hb_057688_010--Hb_001089_030 Hb_001720_040 Hb_001720_040 Hb_057688_010--Hb_001720_040 Hb_000803_270 Hb_000803_270 Hb_057688_010--Hb_000803_270 Hb_183510_020 Hb_183510_020 Hb_057688_010--Hb_183510_020 Hb_002461_060 Hb_002461_060 Hb_011909_120--Hb_002461_060 Hb_007423_040 Hb_007423_040 Hb_011909_120--Hb_007423_040 Hb_005730_120 Hb_005730_120 Hb_011909_120--Hb_005730_120 Hb_011909_120--Hb_000126_010 Hb_002217_510 Hb_002217_510 Hb_011909_120--Hb_002217_510 Hb_001123_030 Hb_001123_030 Hb_011909_120--Hb_001123_030 Hb_000126_010--Hb_000005_220 Hb_002374_010 Hb_002374_010 Hb_000126_010--Hb_002374_010 Hb_000126_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_000126_010--Hb_000163_220 Hb_063716_100 Hb_063716_100 Hb_000126_010--Hb_063716_100 Hb_000302_310 Hb_000302_310 Hb_000126_010--Hb_000302_310 Hb_000072_170 Hb_000072_170 Hb_011861_060--Hb_000072_170 Hb_035273_010 Hb_035273_010 Hb_011861_060--Hb_035273_010 Hb_002374_230 Hb_002374_230 Hb_011861_060--Hb_002374_230 Hb_001269_650 Hb_001269_650 Hb_011861_060--Hb_001269_650 Hb_000742_170 Hb_000742_170 Hb_011861_060--Hb_000742_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52755 2.24568 3.8216 1.79201 2.54569 2.22166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34038 3.58323 0.278508 3.35788 2.41737

CAGE analysis