Hb_035273_010

Information

Type -
Description -
Location Contig35273: 4590-7408
Sequence    

Annotation

kegg
ID rcu:RCOM_1431330
description protein binding protein, putative
nr
ID XP_012089085.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RF44
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1431330 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035273_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
2 Hb_003678_020 0.121018787 - - conserved hypothetical protein [Ricinus communis]
3 Hb_111036_010 0.1422336194 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
4 Hb_012506_050 0.1448602456 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
5 Hb_000270_330 0.1454659603 - - ribosomal protein S6 kinase, putative [Ricinus communis]
6 Hb_003942_020 0.1454889175 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
7 Hb_004734_040 0.1471843956 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
8 Hb_000075_040 0.1481891878 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
9 Hb_012055_030 0.1485171339 - - Protein FRIGIDA, putative [Ricinus communis]
10 Hb_001386_040 0.1490911966 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
11 Hb_000948_160 0.1497191892 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
12 Hb_004450_040 0.1507179535 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
13 Hb_000462_170 0.1522420883 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000465_390 0.1535004611 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
15 Hb_000110_250 0.1537125477 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
16 Hb_000139_290 0.1549238116 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
17 Hb_002994_030 0.1567488866 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
18 Hb_000126_010 0.1574705538 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
19 Hb_002439_010 0.1576194702 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
20 Hb_000009_660 0.1578907826 - - -

Gene co-expression network

sample Hb_035273_010 Hb_035273_010 Hb_003678_020 Hb_003678_020 Hb_035273_010--Hb_003678_020 Hb_111036_010 Hb_111036_010 Hb_035273_010--Hb_111036_010 Hb_012506_050 Hb_012506_050 Hb_035273_010--Hb_012506_050 Hb_000270_330 Hb_000270_330 Hb_035273_010--Hb_000270_330 Hb_003942_020 Hb_003942_020 Hb_035273_010--Hb_003942_020 Hb_004734_040 Hb_004734_040 Hb_035273_010--Hb_004734_040 Hb_000069_720 Hb_000069_720 Hb_003678_020--Hb_000069_720 Hb_000110_250 Hb_000110_250 Hb_003678_020--Hb_000110_250 Hb_014720_110 Hb_014720_110 Hb_003678_020--Hb_014720_110 Hb_001301_110 Hb_001301_110 Hb_003678_020--Hb_001301_110 Hb_000948_160 Hb_000948_160 Hb_003678_020--Hb_000948_160 Hb_189216_020 Hb_189216_020 Hb_003678_020--Hb_189216_020 Hb_000270_470 Hb_000270_470 Hb_111036_010--Hb_000270_470 Hb_002439_010 Hb_002439_010 Hb_111036_010--Hb_002439_010 Hb_000875_080 Hb_000875_080 Hb_111036_010--Hb_000875_080 Hb_111036_010--Hb_003942_020 Hb_111036_010--Hb_003678_020 Hb_002271_010 Hb_002271_010 Hb_111036_010--Hb_002271_010 Hb_021596_030 Hb_021596_030 Hb_012506_050--Hb_021596_030 Hb_002217_510 Hb_002217_510 Hb_012506_050--Hb_002217_510 Hb_000462_170 Hb_000462_170 Hb_012506_050--Hb_000462_170 Hb_003376_330 Hb_003376_330 Hb_012506_050--Hb_003376_330 Hb_001269_610 Hb_001269_610 Hb_012506_050--Hb_001269_610 Hb_000130_410 Hb_000130_410 Hb_012506_050--Hb_000130_410 Hb_000270_330--Hb_111036_010 Hb_000416_110 Hb_000416_110 Hb_000270_330--Hb_000416_110 Hb_057688_010 Hb_057688_010 Hb_000270_330--Hb_057688_010 Hb_011909_120 Hb_011909_120 Hb_000270_330--Hb_011909_120 Hb_000126_010 Hb_000126_010 Hb_000270_330--Hb_000126_010 Hb_011861_060 Hb_011861_060 Hb_000270_330--Hb_011861_060 Hb_007163_070 Hb_007163_070 Hb_003942_020--Hb_007163_070 Hb_008554_060 Hb_008554_060 Hb_003942_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003942_020--Hb_011512_070 Hb_003942_020--Hb_189216_020 Hb_000529_030 Hb_000529_030 Hb_003942_020--Hb_000529_030 Hb_146673_010 Hb_146673_010 Hb_003942_020--Hb_146673_010 Hb_005391_040 Hb_005391_040 Hb_004734_040--Hb_005391_040 Hb_000903_060 Hb_000903_060 Hb_004734_040--Hb_000903_060 Hb_001653_020 Hb_001653_020 Hb_004734_040--Hb_001653_020 Hb_007894_060 Hb_007894_060 Hb_004734_040--Hb_007894_060 Hb_004734_040--Hb_001301_110 Hb_000665_050 Hb_000665_050 Hb_004734_040--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49613 0.926165 1.8908 1.08271 1.13991 1.55456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37238 3.27098 0.485361 3.56274 2.24655

CAGE analysis