Hb_012506_050

Information

Type transcription factor
Description TF Family: SNF2
Location Contig12506: 82307-91906
Sequence    

Annotation

kegg
ID rcu:RCOM_1186120
description DNA repair helicase rad5,16, putative (EC:2.7.11.1)
nr
ID XP_012076178.1
description PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9FNI6
description Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
trembl
ID A0A067KH89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11241 PE=4 SV=1
Gene Ontology
ID GO:0003677
description swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07661: 82720-83460 , PASA_asmbl_07662: 83853-84147 , PASA_asmbl_07663: 84653-85171 , PASA_asmbl_07664: 85172-87859 , PASA_asmbl_07665: 88699-88980 , PASA_asmbl_07666: 89060-91386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012506_050 0.0 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
2 Hb_021596_030 0.0893875894 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
3 Hb_002217_510 0.1010569707 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000462_170 0.1013213861 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003376_330 0.10213368 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
6 Hb_001269_610 0.1026848554 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
7 Hb_000130_410 0.1055103983 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
8 Hb_002739_020 0.1057232521 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
9 Hb_062226_140 0.1072787684 - - PREDICTED: protein NEDD1 [Jatropha curcas]
10 Hb_011909_120 0.1103209972 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
11 Hb_003494_200 0.1104249306 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
12 Hb_004453_130 0.1109947143 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
13 Hb_005730_120 0.1112577015 - - PREDICTED: protein WHI4 [Jatropha curcas]
14 Hb_001599_040 0.1117978296 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
15 Hb_005391_040 0.1126093215 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
16 Hb_000599_300 0.1133648344 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
17 Hb_000948_160 0.114320357 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
18 Hb_000227_090 0.1147841097 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
19 Hb_000708_030 0.1150690907 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
20 Hb_004450_040 0.1153007729 - - PREDICTED: DNA ligase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_012506_050 Hb_012506_050 Hb_021596_030 Hb_021596_030 Hb_012506_050--Hb_021596_030 Hb_002217_510 Hb_002217_510 Hb_012506_050--Hb_002217_510 Hb_000462_170 Hb_000462_170 Hb_012506_050--Hb_000462_170 Hb_003376_330 Hb_003376_330 Hb_012506_050--Hb_003376_330 Hb_001269_610 Hb_001269_610 Hb_012506_050--Hb_001269_610 Hb_000130_410 Hb_000130_410 Hb_012506_050--Hb_000130_410 Hb_000086_380 Hb_000086_380 Hb_021596_030--Hb_000086_380 Hb_003438_050 Hb_003438_050 Hb_021596_030--Hb_003438_050 Hb_000638_120 Hb_000638_120 Hb_021596_030--Hb_000638_120 Hb_001579_320 Hb_001579_320 Hb_021596_030--Hb_001579_320 Hb_021596_030--Hb_000130_410 Hb_000111_210 Hb_000111_210 Hb_002217_510--Hb_000111_210 Hb_007423_040 Hb_007423_040 Hb_002217_510--Hb_007423_040 Hb_000227_090 Hb_000227_090 Hb_002217_510--Hb_000227_090 Hb_011909_120 Hb_011909_120 Hb_002217_510--Hb_011909_120 Hb_008103_070 Hb_008103_070 Hb_002217_510--Hb_008103_070 Hb_000563_230 Hb_000563_230 Hb_002217_510--Hb_000563_230 Hb_004450_040 Hb_004450_040 Hb_000462_170--Hb_004450_040 Hb_000708_030 Hb_000708_030 Hb_000462_170--Hb_000708_030 Hb_006831_140 Hb_006831_140 Hb_000462_170--Hb_006831_140 Hb_000317_050 Hb_000317_050 Hb_000462_170--Hb_000317_050 Hb_001301_150 Hb_001301_150 Hb_000462_170--Hb_001301_150 Hb_001946_400 Hb_001946_400 Hb_000462_170--Hb_001946_400 Hb_000270_490 Hb_000270_490 Hb_003376_330--Hb_000270_490 Hb_073973_100 Hb_073973_100 Hb_003376_330--Hb_073973_100 Hb_023732_030 Hb_023732_030 Hb_003376_330--Hb_023732_030 Hb_002232_410 Hb_002232_410 Hb_003376_330--Hb_002232_410 Hb_026198_070 Hb_026198_070 Hb_003376_330--Hb_026198_070 Hb_003693_070 Hb_003693_070 Hb_003376_330--Hb_003693_070 Hb_005391_040 Hb_005391_040 Hb_001269_610--Hb_005391_040 Hb_150651_040 Hb_150651_040 Hb_001269_610--Hb_150651_040 Hb_062226_140 Hb_062226_140 Hb_001269_610--Hb_062226_140 Hb_004724_270 Hb_004724_270 Hb_001269_610--Hb_004724_270 Hb_005245_080 Hb_005245_080 Hb_001269_610--Hb_005245_080 Hb_000318_250 Hb_000318_250 Hb_000130_410--Hb_000318_250 Hb_002026_210 Hb_002026_210 Hb_000130_410--Hb_002026_210 Hb_001396_200 Hb_001396_200 Hb_000130_410--Hb_001396_200 Hb_000130_410--Hb_000708_030 Hb_004324_130 Hb_004324_130 Hb_000130_410--Hb_004324_130 Hb_001546_080 Hb_001546_080 Hb_000130_410--Hb_001546_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34492 1.26587 1.30928 1.63147 1.59756 1.47758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.21608 1.9005 0.675902 1.94681 1.52801

CAGE analysis