Hb_011861_060

Information

Type -
Description -
Location Contig11861: 55189-59265
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_060 0.0 - - -
2 Hb_000270_330 0.1320897493 - - ribosomal protein S6 kinase, putative [Ricinus communis]
3 Hb_000072_170 0.1530398983 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
4 Hb_035273_010 0.1668730803 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
5 Hb_002374_230 0.1711618998 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
6 Hb_001269_650 0.1790452409 - - transporter, putative [Ricinus communis]
7 Hb_000742_170 0.1803210691 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_001109_050 0.180790735 - - PREDICTED: ankyrin-1 [Jatropha curcas]
9 Hb_057688_010 0.1815249525 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
10 Hb_000510_340 0.183393674 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
11 Hb_027792_020 0.1838232916 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
12 Hb_111036_010 0.1850544343 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
13 Hb_002046_010 0.1866773993 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000075_040 0.1873158733 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
15 Hb_003292_030 0.188000091 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
16 Hb_001277_030 0.1896143833 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
17 Hb_000212_460 0.1907574904 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
18 Hb_004619_060 0.1908976045 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
19 Hb_071188_010 0.1909896463 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
20 Hb_000002_310 0.1914881917 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]

Gene co-expression network

sample Hb_011861_060 Hb_011861_060 Hb_000270_330 Hb_000270_330 Hb_011861_060--Hb_000270_330 Hb_000072_170 Hb_000072_170 Hb_011861_060--Hb_000072_170 Hb_035273_010 Hb_035273_010 Hb_011861_060--Hb_035273_010 Hb_002374_230 Hb_002374_230 Hb_011861_060--Hb_002374_230 Hb_001269_650 Hb_001269_650 Hb_011861_060--Hb_001269_650 Hb_000742_170 Hb_000742_170 Hb_011861_060--Hb_000742_170 Hb_111036_010 Hb_111036_010 Hb_000270_330--Hb_111036_010 Hb_000416_110 Hb_000416_110 Hb_000270_330--Hb_000416_110 Hb_057688_010 Hb_057688_010 Hb_000270_330--Hb_057688_010 Hb_011909_120 Hb_011909_120 Hb_000270_330--Hb_011909_120 Hb_000126_010 Hb_000126_010 Hb_000270_330--Hb_000126_010 Hb_002126_030 Hb_002126_030 Hb_000072_170--Hb_002126_030 Hb_005276_200 Hb_005276_200 Hb_000072_170--Hb_005276_200 Hb_000085_210 Hb_000085_210 Hb_000072_170--Hb_000085_210 Hb_000749_010 Hb_000749_010 Hb_000072_170--Hb_000749_010 Hb_000699_150 Hb_000699_150 Hb_000072_170--Hb_000699_150 Hb_001439_220 Hb_001439_220 Hb_000072_170--Hb_001439_220 Hb_003678_020 Hb_003678_020 Hb_035273_010--Hb_003678_020 Hb_035273_010--Hb_111036_010 Hb_012506_050 Hb_012506_050 Hb_035273_010--Hb_012506_050 Hb_035273_010--Hb_000270_330 Hb_003942_020 Hb_003942_020 Hb_035273_010--Hb_003942_020 Hb_004734_040 Hb_004734_040 Hb_035273_010--Hb_004734_040 Hb_003093_040 Hb_003093_040 Hb_002374_230--Hb_003093_040 Hb_003159_140 Hb_003159_140 Hb_002374_230--Hb_003159_140 Hb_005542_130 Hb_005542_130 Hb_002374_230--Hb_005542_130 Hb_000175_410 Hb_000175_410 Hb_002374_230--Hb_000175_410 Hb_030414_040 Hb_030414_040 Hb_002374_230--Hb_030414_040 Hb_001158_160 Hb_001158_160 Hb_002374_230--Hb_001158_160 Hb_011224_160 Hb_011224_160 Hb_001269_650--Hb_011224_160 Hb_021576_010 Hb_021576_010 Hb_001269_650--Hb_021576_010 Hb_000190_090 Hb_000190_090 Hb_001269_650--Hb_000190_090 Hb_028960_030 Hb_028960_030 Hb_001269_650--Hb_028960_030 Hb_000979_220 Hb_000979_220 Hb_001269_650--Hb_000979_220 Hb_000510_340 Hb_000510_340 Hb_001269_650--Hb_000510_340 Hb_002046_010 Hb_002046_010 Hb_000742_170--Hb_002046_010 Hb_003683_010 Hb_003683_010 Hb_000742_170--Hb_003683_010 Hb_000022_150 Hb_000022_150 Hb_000742_170--Hb_000022_150 Hb_005333_050 Hb_005333_050 Hb_000742_170--Hb_005333_050 Hb_000011_270 Hb_000011_270 Hb_000742_170--Hb_000011_270 Hb_004096_190 Hb_004096_190 Hb_000742_170--Hb_004096_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.999982 2.05393 3.58833 0.707847 2.26386 1.16679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60673 3.20609 0.307788 4.33107 3.40218

CAGE analysis