Hb_002126_030

Information

Type -
Description -
Location Contig2126: 30313-37273
Sequence    

Annotation

kegg
ID rcu:RCOM_1768240
description ferrochelatase, putative (EC:4.99.1.1)
nr
ID XP_002513282.1
description ferrochelatase, putative [Ricinus communis]
swissprot
ID A2Y3Q5
description Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2
trembl
ID B9RHR3
description Ferrochelatase OS=Ricinus communis GN=RCOM_1768240 PE=3 SV=1
Gene Ontology
ID GO:0004325
description ferrochelatase- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22024: 30201-30434 , PASA_asmbl_22025: 36632-37106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002126_030 0.0 - - ferrochelatase, putative [Ricinus communis]
2 Hb_000699_150 0.0736164401 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
3 Hb_004333_040 0.0760541162 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
4 Hb_011674_040 0.0769099513 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
5 Hb_000072_170 0.0828669545 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
6 Hb_007413_010 0.0857887727 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
7 Hb_113853_010 0.0868620307 - - 50S ribosomal protein L2, putative [Ricinus communis]
8 Hb_033312_130 0.0894293622 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
9 Hb_001635_210 0.0896197301 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
10 Hb_001511_090 0.0905704967 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
11 Hb_001635_110 0.0910735546 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
12 Hb_000169_020 0.0927317954 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
13 Hb_000173_190 0.0931014385 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001008_130 0.0932063317 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
15 Hb_006100_020 0.0932329523 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
16 Hb_003636_080 0.0933040608 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
17 Hb_001300_280 0.0939236953 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
18 Hb_000318_150 0.097102792 - - RNA-binding protein Nova-1, putative [Ricinus communis]
19 Hb_001439_220 0.0977215105 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
20 Hb_003058_140 0.0989515182 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002126_030 Hb_002126_030 Hb_000699_150 Hb_000699_150 Hb_002126_030--Hb_000699_150 Hb_004333_040 Hb_004333_040 Hb_002126_030--Hb_004333_040 Hb_011674_040 Hb_011674_040 Hb_002126_030--Hb_011674_040 Hb_000072_170 Hb_000072_170 Hb_002126_030--Hb_000072_170 Hb_007413_010 Hb_007413_010 Hb_002126_030--Hb_007413_010 Hb_113853_010 Hb_113853_010 Hb_002126_030--Hb_113853_010 Hb_183433_010 Hb_183433_010 Hb_000699_150--Hb_183433_010 Hb_000699_150--Hb_004333_040 Hb_007472_070 Hb_007472_070 Hb_000699_150--Hb_007472_070 Hb_003098_070 Hb_003098_070 Hb_000699_150--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_000699_150--Hb_000365_230 Hb_000176_020 Hb_000176_020 Hb_000699_150--Hb_000176_020 Hb_006189_020 Hb_006189_020 Hb_004333_040--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_004333_040--Hb_033312_040 Hb_000189_600 Hb_000189_600 Hb_004333_040--Hb_000189_600 Hb_000510_360 Hb_000510_360 Hb_004333_040--Hb_000510_360 Hb_004333_040--Hb_183433_010 Hb_000976_110 Hb_000976_110 Hb_011674_040--Hb_000976_110 Hb_000270_170 Hb_000270_170 Hb_011674_040--Hb_000270_170 Hb_000787_200 Hb_000787_200 Hb_011674_040--Hb_000787_200 Hb_003636_080 Hb_003636_080 Hb_011674_040--Hb_003636_080 Hb_000318_150 Hb_000318_150 Hb_011674_040--Hb_000318_150 Hb_000960_080 Hb_000960_080 Hb_011674_040--Hb_000960_080 Hb_005276_200 Hb_005276_200 Hb_000072_170--Hb_005276_200 Hb_000085_210 Hb_000085_210 Hb_000072_170--Hb_000085_210 Hb_000749_010 Hb_000749_010 Hb_000072_170--Hb_000749_010 Hb_000072_170--Hb_000699_150 Hb_001439_220 Hb_001439_220 Hb_000072_170--Hb_001439_220 Hb_006913_020 Hb_006913_020 Hb_007413_010--Hb_006913_020 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_008948_020 Hb_008948_020 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_001925_060 Hb_001925_060 Hb_007413_010--Hb_001925_060 Hb_001789_110 Hb_001789_110 Hb_007413_010--Hb_001789_110 Hb_065525_080 Hb_065525_080 Hb_113853_010--Hb_065525_080 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_005494_010 Hb_005494_010 Hb_113853_010--Hb_005494_010 Hb_093666_010 Hb_093666_010 Hb_113853_010--Hb_093666_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_021374_030 Hb_021374_030 Hb_113853_010--Hb_021374_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77151 7.62894 8.82183 5.44092 2.66579 3.82996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.17065 4.75796 2.39269 6.95313 8.3927

CAGE analysis