Hb_000072_170

Information

Type -
Description -
Location Contig72: 307977-312641
Sequence    

Annotation

kegg
ID mdm:103442477
description ATP-dependent zinc metalloprotease FTSH, chloroplastic
nr
ID XP_012088130.1
description PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
swissprot
ID B9L3S8
description ATP-dependent zinc metalloprotease FtsH 2 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH2 PE=3 SV=1
trembl
ID A0A067JK38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25642 PE=3 SV=1
Gene Ontology
ID GO:0009941
description atp-dependent zinc metalloprotease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_170 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
2 Hb_002126_030 0.0828669545 - - ferrochelatase, putative [Ricinus communis]
3 Hb_005276_200 0.1019094842 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
4 Hb_000085_210 0.1078881096 - - DNA topoisomerase type I, putative [Ricinus communis]
5 Hb_000749_010 0.1114723505 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
6 Hb_000699_150 0.1126271702 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_001439_220 0.1135901112 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
8 Hb_057688_010 0.1143105617 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
9 Hb_004218_180 0.1147564504 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
10 Hb_001157_160 0.1156523484 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
11 Hb_003528_050 0.1167112344 - - protein transporter, putative [Ricinus communis]
12 Hb_011674_040 0.1174444351 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
13 Hb_011671_270 0.1186004059 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_000292_100 0.1195011023 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
15 Hb_002205_230 0.1196610213 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
16 Hb_001589_010 0.1203905239 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
17 Hb_000795_040 0.1205502417 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
18 Hb_000088_270 0.1206780366 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
19 Hb_017469_110 0.120753149 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
20 Hb_000000_230 0.1210404547 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_170 Hb_000072_170 Hb_002126_030 Hb_002126_030 Hb_000072_170--Hb_002126_030 Hb_005276_200 Hb_005276_200 Hb_000072_170--Hb_005276_200 Hb_000085_210 Hb_000085_210 Hb_000072_170--Hb_000085_210 Hb_000749_010 Hb_000749_010 Hb_000072_170--Hb_000749_010 Hb_000699_150 Hb_000699_150 Hb_000072_170--Hb_000699_150 Hb_001439_220 Hb_001439_220 Hb_000072_170--Hb_001439_220 Hb_002126_030--Hb_000699_150 Hb_004333_040 Hb_004333_040 Hb_002126_030--Hb_004333_040 Hb_011674_040 Hb_011674_040 Hb_002126_030--Hb_011674_040 Hb_007413_010 Hb_007413_010 Hb_002126_030--Hb_007413_010 Hb_113853_010 Hb_113853_010 Hb_002126_030--Hb_113853_010 Hb_017469_110 Hb_017469_110 Hb_005276_200--Hb_017469_110 Hb_000795_040 Hb_000795_040 Hb_005276_200--Hb_000795_040 Hb_011174_020 Hb_011174_020 Hb_005276_200--Hb_011174_020 Hb_013459_020 Hb_013459_020 Hb_005276_200--Hb_013459_020 Hb_002205_030 Hb_002205_030 Hb_005276_200--Hb_002205_030 Hb_001925_060 Hb_001925_060 Hb_005276_200--Hb_001925_060 Hb_000085_210--Hb_000795_040 Hb_000111_170 Hb_000111_170 Hb_000085_210--Hb_000111_170 Hb_005288_070 Hb_005288_070 Hb_000085_210--Hb_005288_070 Hb_000676_330 Hb_000676_330 Hb_000085_210--Hb_000676_330 Hb_000085_210--Hb_017469_110 Hb_000085_210--Hb_001439_220 Hb_002205_230 Hb_002205_230 Hb_000749_010--Hb_002205_230 Hb_001377_190 Hb_001377_190 Hb_000749_010--Hb_001377_190 Hb_000363_310 Hb_000363_310 Hb_000749_010--Hb_000363_310 Hb_021374_030 Hb_021374_030 Hb_000749_010--Hb_021374_030 Hb_000599_270 Hb_000599_270 Hb_000749_010--Hb_000599_270 Hb_000749_010--Hb_000111_170 Hb_183433_010 Hb_183433_010 Hb_000699_150--Hb_183433_010 Hb_000699_150--Hb_004333_040 Hb_007472_070 Hb_007472_070 Hb_000699_150--Hb_007472_070 Hb_003098_070 Hb_003098_070 Hb_000699_150--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_000699_150--Hb_000365_230 Hb_000176_020 Hb_000176_020 Hb_000699_150--Hb_000176_020 Hb_033642_120 Hb_033642_120 Hb_001439_220--Hb_033642_120 Hb_000868_120 Hb_000868_120 Hb_001439_220--Hb_000868_120 Hb_010287_020 Hb_010287_020 Hb_001439_220--Hb_010287_020 Hb_000445_060 Hb_000445_060 Hb_001439_220--Hb_000445_060 Hb_002435_100 Hb_002435_100 Hb_001439_220--Hb_002435_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.602425 2.1739 1.85389 1.13929 1.04084 0.85511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46776 1.76895 0.553916 1.93195 2.51855

CAGE analysis