Hb_005276_200

Information

Type -
Description -
Location Contig5276: 205792-212364
Sequence    

Annotation

kegg
ID tcc:TCM_004400
description SecY protein transport family protein
nr
ID XP_012092261.1
description PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
swissprot
ID F4IQV7
description Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1
trembl
ID A0A067JN72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21941 PE=3 SV=1
Gene Ontology
ID GO:0009526
description preprotein translocase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47102: 205970-206399 , PASA_asmbl_47103: 206419-207972 , PASA_asmbl_47104: 208004-208275 , PASA_asmbl_47105: 210654-210839 , PASA_asmbl_47107: 212771-213317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_200 0.0 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
2 Hb_017469_110 0.0643062305 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
3 Hb_000795_040 0.0734538685 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
4 Hb_011174_020 0.0747588244 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
5 Hb_013459_020 0.075782512 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
6 Hb_002205_030 0.0791399366 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
7 Hb_001925_060 0.0841469623 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
8 Hb_001089_030 0.0862171716 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
9 Hb_000085_210 0.0862743083 - - DNA topoisomerase type I, putative [Ricinus communis]
10 Hb_012244_020 0.0873654893 - - calpain, putative [Ricinus communis]
11 Hb_000749_010 0.0902235302 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
12 Hb_003417_040 0.0905479967 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
13 Hb_001589_010 0.0914046457 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
14 Hb_001862_130 0.092100406 - - Protein FRIGIDA, putative [Ricinus communis]
15 Hb_001648_020 0.0941891185 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
16 Hb_188281_040 0.0951202245 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
17 Hb_000007_010 0.095191965 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
18 Hb_057688_010 0.0952395129 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
19 Hb_006816_370 0.0953742473 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
20 Hb_000482_190 0.0957057797 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_005276_200 Hb_005276_200 Hb_017469_110 Hb_017469_110 Hb_005276_200--Hb_017469_110 Hb_000795_040 Hb_000795_040 Hb_005276_200--Hb_000795_040 Hb_011174_020 Hb_011174_020 Hb_005276_200--Hb_011174_020 Hb_013459_020 Hb_013459_020 Hb_005276_200--Hb_013459_020 Hb_002205_030 Hb_002205_030 Hb_005276_200--Hb_002205_030 Hb_001925_060 Hb_001925_060 Hb_005276_200--Hb_001925_060 Hb_017469_110--Hb_013459_020 Hb_017469_110--Hb_011174_020 Hb_017469_110--Hb_000795_040 Hb_002581_010 Hb_002581_010 Hb_017469_110--Hb_002581_010 Hb_001008_070 Hb_001008_070 Hb_017469_110--Hb_001008_070 Hb_000085_210 Hb_000085_210 Hb_000795_040--Hb_000085_210 Hb_000795_040--Hb_002581_010 Hb_000795_040--Hb_011174_020 Hb_000795_040--Hb_001925_060 Hb_000879_040 Hb_000879_040 Hb_000795_040--Hb_000879_040 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_011174_020--Hb_001925_060 Hb_000826_070 Hb_000826_070 Hb_013459_020--Hb_000826_070 Hb_013459_020--Hb_011174_020 Hb_002973_110 Hb_002973_110 Hb_013459_020--Hb_002973_110 Hb_001999_140 Hb_001999_140 Hb_013459_020--Hb_001999_140 Hb_013459_020--Hb_001008_070 Hb_057688_010 Hb_057688_010 Hb_002205_030--Hb_057688_010 Hb_028960_020 Hb_028960_020 Hb_002205_030--Hb_028960_020 Hb_000797_040 Hb_000797_040 Hb_002205_030--Hb_000797_040 Hb_003517_040 Hb_003517_040 Hb_002205_030--Hb_003517_040 Hb_000665_120 Hb_000665_120 Hb_002205_030--Hb_000665_120 Hb_001377_190 Hb_001377_190 Hb_002205_030--Hb_001377_190 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.14236 7.49554 5.14619 4.13716 4.687 5.10289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48331 4.54357 2.14078 5.26634 9.90541

CAGE analysis