Hb_001269_650

Information

Type -
Description -
Location Contig1269: 668269-674593
Sequence    

Annotation

kegg
ID rcu:RCOM_1442510
description transporter, putative
nr
ID XP_002512755.1
description transporter, putative [Ricinus communis]
swissprot
ID Q9SQN2
description Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1
trembl
ID B9RGP6
description Transporter, putative OS=Ricinus communis GN=RCOM_1442510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08251: 663701-667481 , PASA_asmbl_08252: 663711-667481
cDNA
(Sanger)
(ID:Location)		 008_F11.ab1: 663704-667460 , 017_F04.ab1: 663711-667481

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_650 0.0 - - transporter, putative [Ricinus communis]
2 Hb_011224_160 0.0975761465 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
3 Hb_021576_010 0.1040783175 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
4 Hb_000190_090 0.1070949674 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
5 Hb_028960_030 0.1080490932 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
6 Hb_000979_220 0.1128198676 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
7 Hb_000510_340 0.1133339899 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
8 Hb_002046_010 0.1137479539 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000317_350 0.1185736483 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
10 Hb_000212_460 0.1192883201 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
11 Hb_002908_040 0.1237541827 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
12 Hb_002301_100 0.1252232508 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
13 Hb_001493_150 0.1255156371 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
14 Hb_012022_080 0.1258756415 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_003528_050 0.126282556 - - protein transporter, putative [Ricinus communis]
16 Hb_180450_010 0.1278186456 - - FF domain-containing family protein [Populus trichocarpa]
17 Hb_172112_020 0.1281401927 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
18 Hb_001168_050 0.1287212038 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
19 Hb_004291_040 0.1294110953 - - hexokinase [Manihot esculenta]
20 Hb_003777_290 0.1294409673 - - polypyrimidine tract binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001269_650 Hb_001269_650 Hb_011224_160 Hb_011224_160 Hb_001269_650--Hb_011224_160 Hb_021576_010 Hb_021576_010 Hb_001269_650--Hb_021576_010 Hb_000190_090 Hb_000190_090 Hb_001269_650--Hb_000190_090 Hb_028960_030 Hb_028960_030 Hb_001269_650--Hb_028960_030 Hb_000979_220 Hb_000979_220 Hb_001269_650--Hb_000979_220 Hb_000510_340 Hb_000510_340 Hb_001269_650--Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_000347_450 Hb_000347_450 Hb_011224_160--Hb_000347_450 Hb_000088_270 Hb_000088_270 Hb_011224_160--Hb_000088_270 Hb_003777_290 Hb_003777_290 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_011224_160--Hb_021576_010 Hb_021576_010--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_021576_010--Hb_004096_110 Hb_021576_010--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_021576_010--Hb_000327_250 Hb_016347_010 Hb_016347_010 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180 Hb_012022_080 Hb_012022_080 Hb_000190_090--Hb_012022_080 Hb_042474_010 Hb_042474_010 Hb_000190_090--Hb_042474_010 Hb_000190_090--Hb_004096_110 Hb_000190_090--Hb_011224_160 Hb_000190_090--Hb_021576_010 Hb_000190_090--Hb_016347_010 Hb_028960_030--Hb_011224_160 Hb_003683_010 Hb_003683_010 Hb_028960_030--Hb_003683_010 Hb_028960_030--Hb_000979_220 Hb_011671_270 Hb_011671_270 Hb_028960_030--Hb_011671_270 Hb_011674_040 Hb_011674_040 Hb_028960_030--Hb_011674_040 Hb_028960_030--Hb_021576_010 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_000979_220--Hb_003777_290 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_000510_340--Hb_001828_180 Hb_000510_340--Hb_003528_050 Hb_000510_340--Hb_011671_270 Hb_000510_340--Hb_000979_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33531 2.00013 2.44576 1.56327 1.82671 0.939607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53147 2.37961 1.53836 5.87344 3.59176

CAGE analysis