Hb_001862_120

Information

Type -
Description -
Location Contig1862: 123107-129596
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18810g
description POPTRDRAFT_831438; hypothetical protein
nr
ID XP_012079339.1
description PREDICTED: aspartic proteinase-like protein 2 [Jatropha curcas]
swissprot
ID Q9S9K4
description Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2
trembl
ID B9H6L4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18810g PE=3 SV=2
Gene Ontology
ID GO:0004190
description aspartic proteinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18294: 123140-125662 , PASA_asmbl_18296: 127039-129266 , PASA_asmbl_18297: 130076-132056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_120 0.0 - - PREDICTED: aspartic proteinase-like protein 2 [Jatropha curcas]
2 Hb_001386_110 0.1671556892 - - PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
3 Hb_000676_140 0.1671822505 - - structural constituent of ribosome, putative [Ricinus communis]
4 Hb_001221_560 0.1687068484 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
5 Hb_000627_260 0.1754818042 - - chloride channel clc, putative [Ricinus communis]
6 Hb_001623_100 0.1771173455 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
7 Hb_018279_020 0.1784761618 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
8 Hb_000877_080 0.1798355302 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
9 Hb_011330_020 0.1834360578 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
10 Hb_001269_610 0.1872074715 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
11 Hb_111844_010 0.1874327997 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
12 Hb_001056_030 0.1875961305 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
13 Hb_004709_010 0.1903269972 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
14 Hb_010815_030 0.1911822278 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
15 Hb_003106_220 0.191236279 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
16 Hb_027472_140 0.1917310286 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
17 Hb_000155_160 0.1925047838 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
18 Hb_000224_200 0.1933769629 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
19 Hb_000997_250 0.1942218355 - - PREDICTED: probable alpha-mannosidase I MNS4 [Jatropha curcas]
20 Hb_157023_020 0.1943666582 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001862_120 Hb_001862_120 Hb_001386_110 Hb_001386_110 Hb_001862_120--Hb_001386_110 Hb_000676_140 Hb_000676_140 Hb_001862_120--Hb_000676_140 Hb_001221_560 Hb_001221_560 Hb_001862_120--Hb_001221_560 Hb_000627_260 Hb_000627_260 Hb_001862_120--Hb_000627_260 Hb_001623_100 Hb_001623_100 Hb_001862_120--Hb_001623_100 Hb_018279_020 Hb_018279_020 Hb_001862_120--Hb_018279_020 Hb_000155_160 Hb_000155_160 Hb_001386_110--Hb_000155_160 Hb_002609_200 Hb_002609_200 Hb_001386_110--Hb_002609_200 Hb_000419_020 Hb_000419_020 Hb_001386_110--Hb_000419_020 Hb_189216_020 Hb_189216_020 Hb_001386_110--Hb_189216_020 Hb_001976_040 Hb_001976_040 Hb_001386_110--Hb_001976_040 Hb_007747_050 Hb_007747_050 Hb_001386_110--Hb_007747_050 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_000866_240 Hb_000866_240 Hb_000676_140--Hb_000866_240 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_001016_150 Hb_001016_150 Hb_000676_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_000676_140--Hb_001863_430 Hb_000270_330 Hb_000270_330 Hb_001221_560--Hb_000270_330 Hb_006384_010 Hb_006384_010 Hb_001221_560--Hb_006384_010 Hb_012506_070 Hb_012506_070 Hb_001221_560--Hb_012506_070 Hb_001221_560--Hb_000676_140 Hb_116420_010 Hb_116420_010 Hb_001221_560--Hb_116420_010 Hb_001769_170 Hb_001769_170 Hb_000627_260--Hb_001769_170 Hb_009767_130 Hb_009767_130 Hb_000627_260--Hb_009767_130 Hb_003994_160 Hb_003994_160 Hb_000627_260--Hb_003994_160 Hb_000796_160 Hb_000796_160 Hb_000627_260--Hb_000796_160 Hb_000172_440 Hb_000172_440 Hb_000627_260--Hb_000172_440 Hb_157023_020 Hb_157023_020 Hb_000627_260--Hb_157023_020 Hb_004129_090 Hb_004129_090 Hb_001623_100--Hb_004129_090 Hb_014497_100 Hb_014497_100 Hb_001623_100--Hb_014497_100 Hb_002316_140 Hb_002316_140 Hb_001623_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_001623_100--Hb_001178_010 Hb_010098_020 Hb_010098_020 Hb_001623_100--Hb_010098_020 Hb_002972_010 Hb_002972_010 Hb_001623_100--Hb_002972_010 Hb_002226_040 Hb_002226_040 Hb_018279_020--Hb_002226_040 Hb_001832_150 Hb_001832_150 Hb_018279_020--Hb_001832_150 Hb_000224_200 Hb_000224_200 Hb_018279_020--Hb_000224_200 Hb_003206_120 Hb_003206_120 Hb_018279_020--Hb_003206_120 Hb_000003_540 Hb_000003_540 Hb_018279_020--Hb_000003_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.368 5.58559 7.54356 12.2821 5.80644 3.36656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7655 18.013 0.737474 2.47428 10.0875

CAGE analysis