Hb_003206_120

Information

Type -
Description -
Location Contig3206: 187783-199197
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03610g
description POPTRDRAFT_569405; hypothetical protein
nr
ID XP_012075033.1
description PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
swissprot
ID P54767
description Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067KGW3
description Glutamate decarboxylase OS=Jatropha curcas GN=JCGZ_10928 PE=3 SV=1
Gene Ontology
ID GO:0009506
description glutamate decarboxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33880: 187944-199423 , PASA_asmbl_33881: 198096-198664 , PASA_asmbl_33882: 197101-197455 , PASA_asmbl_33883: 196584-196872 , PASA_asmbl_33885: 188038-188707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_120 0.0 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
2 Hb_000224_200 0.1845687013 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
3 Hb_000003_080 0.1865119666 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
4 Hb_005288_190 0.1876254104 - - PREDICTED: exportin-4 [Jatropha curcas]
5 Hb_001842_100 0.1906619573 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
6 Hb_001416_010 0.1912617902 - - Thioredoxin H-type, putative [Ricinus communis]
7 Hb_001143_130 0.193506302 - - peroxidase 2 [Hevea brasiliensis]
8 Hb_000167_060 0.1937401742 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas]
9 Hb_060715_010 0.1952067016 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
10 Hb_075265_010 0.1955316255 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_018279_020 0.1971862738 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
12 Hb_000003_540 0.1972883768 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
13 Hb_020581_010 0.1973635953 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_062226_140 0.1990466063 - - PREDICTED: protein NEDD1 [Jatropha curcas]
15 Hb_001269_610 0.2004659651 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
16 Hb_001380_020 0.2007858567 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
17 Hb_006018_040 0.2015058094 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
18 Hb_002301_180 0.2038350704 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
19 Hb_029879_110 0.2038394005 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
20 Hb_000696_160 0.2043979661 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]

Gene co-expression network

sample Hb_003206_120 Hb_003206_120 Hb_000224_200 Hb_000224_200 Hb_003206_120--Hb_000224_200 Hb_000003_080 Hb_000003_080 Hb_003206_120--Hb_000003_080 Hb_005288_190 Hb_005288_190 Hb_003206_120--Hb_005288_190 Hb_001842_100 Hb_001842_100 Hb_003206_120--Hb_001842_100 Hb_001416_010 Hb_001416_010 Hb_003206_120--Hb_001416_010 Hb_001143_130 Hb_001143_130 Hb_003206_120--Hb_001143_130 Hb_014783_010 Hb_014783_010 Hb_000224_200--Hb_014783_010 Hb_002809_130 Hb_002809_130 Hb_000224_200--Hb_002809_130 Hb_000167_060 Hb_000167_060 Hb_000224_200--Hb_000167_060 Hb_019249_010 Hb_019249_010 Hb_000224_200--Hb_019249_010 Hb_003371_180 Hb_003371_180 Hb_000224_200--Hb_003371_180 Hb_002900_160 Hb_002900_160 Hb_000224_200--Hb_002900_160 Hb_000116_440 Hb_000116_440 Hb_000003_080--Hb_000116_440 Hb_000342_100 Hb_000342_100 Hb_000003_080--Hb_000342_100 Hb_020581_010 Hb_020581_010 Hb_000003_080--Hb_020581_010 Hb_000272_020 Hb_000272_020 Hb_000003_080--Hb_000272_020 Hb_000220_220 Hb_000220_220 Hb_000003_080--Hb_000220_220 Hb_000003_080--Hb_001842_100 Hb_003688_130 Hb_003688_130 Hb_005288_190--Hb_003688_130 Hb_002311_180 Hb_002311_180 Hb_005288_190--Hb_002311_180 Hb_002739_050 Hb_002739_050 Hb_005288_190--Hb_002739_050 Hb_005730_120 Hb_005730_120 Hb_005288_190--Hb_005730_120 Hb_005288_190--Hb_001416_010 Hb_001454_400 Hb_001454_400 Hb_005288_190--Hb_001454_400 Hb_005291_030 Hb_005291_030 Hb_001842_100--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_001842_100--Hb_001287_080 Hb_002271_020 Hb_002271_020 Hb_001842_100--Hb_002271_020 Hb_001221_100 Hb_001221_100 Hb_001842_100--Hb_001221_100 Hb_002893_050 Hb_002893_050 Hb_001842_100--Hb_002893_050 Hb_000086_380 Hb_000086_380 Hb_001842_100--Hb_000086_380 Hb_001416_010--Hb_001454_400 Hb_007875_030 Hb_007875_030 Hb_001416_010--Hb_007875_030 Hb_002601_110 Hb_002601_110 Hb_001416_010--Hb_002601_110 Hb_003878_010 Hb_003878_010 Hb_001416_010--Hb_003878_010 Hb_003544_020 Hb_003544_020 Hb_001416_010--Hb_003544_020 Hb_003747_220 Hb_003747_220 Hb_001143_130--Hb_003747_220 Hb_007590_050 Hb_007590_050 Hb_001143_130--Hb_007590_050 Hb_000252_150 Hb_000252_150 Hb_001143_130--Hb_000252_150 Hb_000905_060 Hb_000905_060 Hb_001143_130--Hb_000905_060 Hb_000120_330 Hb_000120_330 Hb_001143_130--Hb_000120_330 Hb_024071_020 Hb_024071_020 Hb_001143_130--Hb_024071_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.979 112.856 34.5825 124.543 73.931 87.6469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
243.699 164.016 3.24004 44.1835 55.0133

CAGE analysis