Hb_000167_060

Information

Type -
Description -
Location Contig167: 37140-37857
Sequence    

Annotation

kegg
ID csv:101232389
description uncharacterized LOC101232389
nr
ID XP_012080966.1
description PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas]
swissprot
ID Q9CAE4
description U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana GN=SNRNP31 PE=2 SV=1
trembl
ID A0A067KDZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16159 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15397: 34370-37865 , PASA_asmbl_15398: 34646-37175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_060 0.0 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas]
2 Hb_003943_130 0.1329391346 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
3 Hb_005667_040 0.1373780116 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
4 Hb_020581_010 0.1383310331 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004223_220 0.1405382026 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
6 Hb_019249_010 0.1406688932 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
7 Hb_002289_120 0.144684737 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
8 Hb_001287_080 0.1463554601 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000111_380 0.1465349359 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
10 Hb_086703_010 0.1470796259 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
11 Hb_000679_300 0.1504857336 - - PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
12 Hb_004976_070 0.1512771699 - - eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis]
13 Hb_004127_010 0.1522612564 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Malus domestica]
14 Hb_000003_080 0.1527899324 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
15 Hb_000268_010 0.1538689708 - - conserved hypothetical protein [Ricinus communis]
16 Hb_031089_040 0.1561169082 - - thioredoxin H-type 1 [Hevea brasiliensis]
17 Hb_004502_020 0.156605641 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
18 Hb_184570_010 0.1571991194 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
19 Hb_060715_010 0.158708014 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
20 Hb_003011_040 0.1588057989 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_000167_060 Hb_000167_060 Hb_003943_130 Hb_003943_130 Hb_000167_060--Hb_003943_130 Hb_005667_040 Hb_005667_040 Hb_000167_060--Hb_005667_040 Hb_020581_010 Hb_020581_010 Hb_000167_060--Hb_020581_010 Hb_004223_220 Hb_004223_220 Hb_000167_060--Hb_004223_220 Hb_019249_010 Hb_019249_010 Hb_000167_060--Hb_019249_010 Hb_002289_120 Hb_002289_120 Hb_000167_060--Hb_002289_120 Hb_001369_640 Hb_001369_640 Hb_003943_130--Hb_001369_640 Hb_003943_130--Hb_002289_120 Hb_000152_420 Hb_000152_420 Hb_003943_130--Hb_000152_420 Hb_002316_060 Hb_002316_060 Hb_003943_130--Hb_002316_060 Hb_001538_090 Hb_001538_090 Hb_003943_130--Hb_001538_090 Hb_006909_030 Hb_006909_030 Hb_003943_130--Hb_006909_030 Hb_002686_110 Hb_002686_110 Hb_005667_040--Hb_002686_110 Hb_004709_010 Hb_004709_010 Hb_005667_040--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_005667_040--Hb_014720_040 Hb_005278_020 Hb_005278_020 Hb_005667_040--Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020 Hb_000342_100 Hb_000342_100 Hb_020581_010--Hb_000342_100 Hb_000003_080 Hb_000003_080 Hb_020581_010--Hb_000003_080 Hb_000272_020 Hb_000272_020 Hb_020581_010--Hb_000272_020 Hb_002253_100 Hb_002253_100 Hb_020581_010--Hb_002253_100 Hb_002893_050 Hb_002893_050 Hb_020581_010--Hb_002893_050 Hb_001842_100 Hb_001842_100 Hb_020581_010--Hb_001842_100 Hb_003011_040 Hb_003011_040 Hb_004223_220--Hb_003011_040 Hb_093666_020 Hb_093666_020 Hb_004223_220--Hb_093666_020 Hb_004502_020 Hb_004502_020 Hb_004223_220--Hb_004502_020 Hb_002296_040 Hb_002296_040 Hb_004223_220--Hb_002296_040 Hb_000155_180 Hb_000155_180 Hb_004223_220--Hb_000155_180 Hb_184570_010 Hb_184570_010 Hb_004223_220--Hb_184570_010 Hb_181288_010 Hb_181288_010 Hb_019249_010--Hb_181288_010 Hb_128048_010 Hb_128048_010 Hb_019249_010--Hb_128048_010 Hb_019249_010--Hb_002289_120 Hb_001814_070 Hb_001814_070 Hb_019249_010--Hb_001814_070 Hb_001817_090 Hb_001817_090 Hb_019249_010--Hb_001817_090 Hb_003878_010 Hb_003878_010 Hb_019249_010--Hb_003878_010 Hb_002289_120--Hb_001814_070 Hb_002289_120--Hb_000152_420 Hb_002289_120--Hb_001369_640 Hb_002289_120--Hb_128048_010 Hb_002289_120--Hb_003878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.52884 5.03684 2.55048 8.66317 5.28392 10.7774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.83618 16.1163 1.78495 2.29253 3.61846

CAGE analysis