Hb_001976_040

Information

Type -
Description -
Location Contig1976: 23608-24557
Sequence    

Annotation

kegg
ID cmo:103484929
description uncharacterized LOC103484929
nr
ID XP_012081670.1
description PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S8F9
description Nicotinamidase 1 OS=Arabidopsis thaliana GN=NIC1 PE=1 SV=1
trembl
ID A0A067KD75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18704 PE=4 SV=1
Gene Ontology
ID GO:0003824
description isochorismatase family protein pnca

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19853: 22125-24541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001976_040 0.0 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
2 Hb_000465_070 0.0994852506 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
3 Hb_002609_200 0.1089098792 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_007827_010 0.111160125 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
5 Hb_000035_480 0.1129116197 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
6 Hb_001489_090 0.1143035835 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
7 Hb_001910_010 0.11615165 - - Dual specificity protein phosphatase, putative [Ricinus communis]
8 Hb_002820_020 0.1187723674 - - hypothetical protein VITISV_005587 [Vitis vinifera]
9 Hb_062226_060 0.1208501209 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
10 Hb_003768_030 0.1222193523 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
11 Hb_001195_200 0.1229193958 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
12 Hb_001386_110 0.123149235 - - PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
13 Hb_000483_300 0.1245070791 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
14 Hb_000347_240 0.1249085151 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
15 Hb_000403_070 0.1256433669 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_003020_260 0.1270456263 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
17 Hb_000107_150 0.128419659 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
18 Hb_000457_290 0.1288734764 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
19 Hb_001728_060 0.1289812509 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
20 Hb_000649_140 0.1292023276 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001976_040 Hb_001976_040 Hb_000465_070 Hb_000465_070 Hb_001976_040--Hb_000465_070 Hb_002609_200 Hb_002609_200 Hb_001976_040--Hb_002609_200 Hb_007827_010 Hb_007827_010 Hb_001976_040--Hb_007827_010 Hb_000035_480 Hb_000035_480 Hb_001976_040--Hb_000035_480 Hb_001489_090 Hb_001489_090 Hb_001976_040--Hb_001489_090 Hb_001910_010 Hb_001910_010 Hb_001976_040--Hb_001910_010 Hb_000465_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_000465_070--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000465_070--Hb_000403_070 Hb_002232_060 Hb_002232_060 Hb_000465_070--Hb_002232_060 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100 Hb_002609_200--Hb_007827_010 Hb_000566_120 Hb_000566_120 Hb_002609_200--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_002609_200--Hb_001279_080 Hb_000431_070 Hb_000431_070 Hb_002609_200--Hb_000431_070 Hb_011457_050 Hb_011457_050 Hb_002609_200--Hb_011457_050 Hb_001353_010 Hb_001353_010 Hb_002609_200--Hb_001353_010 Hb_007827_010--Hb_001279_080 Hb_002872_050 Hb_002872_050 Hb_007827_010--Hb_002872_050 Hb_000107_150 Hb_000107_150 Hb_007827_010--Hb_000107_150 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270 Hb_140627_010 Hb_140627_010 Hb_000035_480--Hb_140627_010 Hb_000035_480--Hb_000457_290 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_000392_550 Hb_000392_550 Hb_000035_480--Hb_000392_550 Hb_003465_030 Hb_003465_030 Hb_001489_090--Hb_003465_030 Hb_000347_240 Hb_000347_240 Hb_001489_090--Hb_000347_240 Hb_001195_200 Hb_001195_200 Hb_001489_090--Hb_001195_200 Hb_000948_160 Hb_000948_160 Hb_001489_090--Hb_000948_160 Hb_008453_030 Hb_008453_030 Hb_001489_090--Hb_008453_030 Hb_004586_420 Hb_004586_420 Hb_001489_090--Hb_004586_420 Hb_094970_010 Hb_094970_010 Hb_001910_010--Hb_094970_010 Hb_006059_030 Hb_006059_030 Hb_001910_010--Hb_006059_030 Hb_005976_080 Hb_005976_080 Hb_001910_010--Hb_005976_080 Hb_003376_250 Hb_003376_250 Hb_001910_010--Hb_003376_250 Hb_000327_180 Hb_000327_180 Hb_001910_010--Hb_000327_180 Hb_000309_050 Hb_000309_050 Hb_001910_010--Hb_000309_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.70239 10.0682 13.9996 22.0544 13.675 5.21255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1619 36.4787 15.5021 23.736 32.826

CAGE analysis